View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_66 (Length: 313)
Name: NF1213_low_66
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_66 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 25 - 313
Target Start/End: Complemental strand, 19597276 - 19596988
Alignment:
| Q |
25 |
catcacctacagtatcgccaccatcatcaccatcaccataccattctaatttttcatcgagtcacattcgtcctccatggcctcgttcagtgaacccacc |
124 |
Q |
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| T |
19597276 |
catcaccaacagtatcaccaccatcatcaccattaccataccattctaatttttcatcgagtcacattcgtcctccatggcctcgttcagtgaacccacc |
19597177 |
T |
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| Q |
125 |
accaatatatcattcagtgatccctagaagatacccactaggacgaccatcaacaccatcaccaacagtatcaccaccatcatcaccattacgaagagca |
224 |
Q |
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| T |
19597176 |
accaatatatcattcagtgatccctagaagatacccatcaggacgaccatcaacaccatcaccaacagtatcaccaccatcatcaccattacgaagagca |
19597077 |
T |
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| Q |
225 |
tcacaatctaatgaacaacataatatgcagatcattgatccagttgaaatcttcatagcctttgccgcaacctcttgtgttttctatct |
313 |
Q |
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| T |
19597076 |
tcgcaatctaatgaacaagataatatgcagatcattgatccaattgaaatcttcatagtctttgccgcaacctcttgtgttttctatct |
19596988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 19597287 - 19597241
Alignment:
| Q |
170 |
accatcaacaccatcaccaacagtatcaccaccatcatcaccattac |
216 |
Q |
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| T |
19597287 |
accatcaacaccatcaccaacagtatcaccaccatcatcaccattac |
19597241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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