View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_70 (Length: 303)

Name: NF1213_low_70
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_70
NF1213_low_70
[»] chr1 (1 HSPs)
chr1 (1-303)||(42089013-42089310)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 42089013 - 42089310
Alignment:
Q  1 ggtaacacgatgctatactaaattaatatattttttgttctgttaactttctctttttgatctccatcattgtctgcatattgatcgatattaatgaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42089013 ggtaacacgatgctatactaaattaatatattttttgttctgttaactttctctttttgatctccattattgtctgcatattgatcgatattaatgaatt 42089112  T
Q  101 accagggaccagaattgaccatagtacttttgtgtagtatgatacataccactatctattgcatgagatattgtacagaaagtaaatagtactatatgca 200  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||||||| |||||||||||||||||||||||||||    
T  42089113 accagg-accagaattgaccatagtacttttgtgtagtatgatgcataccactat----tgcatgagatattatacagaaagtaaatagtactatatgca 42089207  T
Q  201 ttttcatgttttcagggcattcaaatttaatttagtgattatcatgatttggttatttcgttaatgtaaagatacatgaaagggaacaagaaataattat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42089208 ttttcatgttttcagggcattcaaatttaatttagtgattatcatgatttggttatttcgttaatgtaaagatacatgaaagggaacaagaaatcattat 42089307  T

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