View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_76 (Length: 286)
Name: NF1213_low_76
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 41531788 - 41531652
Alignment:
| Q |
1 |
aaattaaattgtaaaaagacactttaaataaataacaaaattatgagaaaagagacaacactaaagcttaatactctctatatatatttgacgactctac |
100 |
Q |
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| T |
41531788 |
aaattaaattgtaaaaagacactttaaataaataacaaaattatgagaaaagagacaacactaaagcttaatactctctatatatatttgacgactctac |
41531689 |
T |
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| Q |
101 |
tttatgcgataaggttaagttgttgtggttagtatat |
137 |
Q |
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| T |
41531688 |
tttatgctataaggttaagttgttgtggttagtatat |
41531652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 41531751 - 41531795
Alignment:
| Q |
242 |
ttgttataaatttaaagtgtccttttacaatttaatttgttgtta |
286 |
Q |
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| T |
41531751 |
ttgttatttatttaaagtgtctttttacaatttaatttgttgtta |
41531795 |
T |
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