View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_8 (Length: 616)
Name: NF1213_low_8
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 324 - 547
Target Start/End: Original strand, 44056988 - 44057211
Alignment:
| Q |
324 |
ctaaatttgaaagaatatggttgaagtccagttcatggacagatattgcagatggatgataaggagggaaaataatgtaagaagaaaaggaaggactatt |
423 |
Q |
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| T |
44056988 |
ctaaatttgaaagaatatggttgaagtccagttcttggacagatattgcagatggatgataaggagggaaaataatgtaagaagaaaaggaaggactatt |
44057087 |
T |
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| Q |
424 |
tttcgtttttgctttgtttgacgaaaattagaaactagaggaaggtagagagaaaagaaggttggttttgttttggtggttttccactccaagtgggaat |
523 |
Q |
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| T |
44057088 |
tttcgtttttgctttgtttgacgaaaattagaaactagaggaaggtagagagaaaagaaggttggttttgttttggtggttttccactccaattgggaat |
44057187 |
T |
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| Q |
524 |
tcaagttaaattctacggcctatg |
547 |
Q |
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| T |
44057188 |
tcaagttaaattctacggcctatg |
44057211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 88 - 298
Target Start/End: Original strand, 44056767 - 44056975
Alignment:
| Q |
88 |
cataacacactatataatcatctgttttgtttcttttatcggccatannnnnnnncgttgttaatcctctattgctatataactttcacgtcctgttata |
187 |
Q |
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| T |
44056767 |
cataacacactatataatcacctgttttgtttcttttatcggccatatttttt--cgttgttaatccactattgctatataactttcacgtcctgttata |
44056864 |
T |
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| Q |
188 |
tccaatcctaagagaggactctttcatgtgtcaaatttgcattaacaaggcactagcagcatataatagacaatatcacattccagcataatttgttatt |
287 |
Q |
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| T |
44056865 |
tccaatcctaagagaggactctttcatgtgtcatatttgcattaacaaggcactagcagcatataatagacaatatcacattccagcacaatttgttatt |
44056964 |
T |
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| Q |
288 |
gagctttgtac |
298 |
Q |
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| T |
44056965 |
gagctttgtac |
44056975 |
T |
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