View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_81 (Length: 282)

Name: NF1213_low_81
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_81
NF1213_low_81
[»] chr6 (3 HSPs)
chr6 (1-271)||(24883685-24883956)
chr6 (182-269)||(32590172-32590259)
chr6 (182-269)||(32600620-32600707)
[»] chr1 (2 HSPs)
chr1 (183-269)||(34577933-34578019)
chr1 (183-269)||(34593767-34593853)
[»] chr7 (2 HSPs)
chr7 (229-271)||(27526722-27526764)
chr7 (229-271)||(27532376-27532418)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 24883956 - 24883685
Alignment:
Q  1 ttactgctataacttctgagtttcttagcagttcctttgtgatgtcatccagtgctcgaatgtcacaaccgatcaataaaggggcctatatatatacaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883956 ttactgctataacttctgagtttcttagcagttcctttgtgatgtcatccagtgctcgaatgtcacaaccgatcaataaaggggcctatatatatacaaa 24883857  T
Q  101 acaatttttt-cttagaggatatgatattattgtgaatagagtaatataaacagcatatgtattaaaataattgtttcaagacaccttaactaatgccca 199  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  24883856 acaatttttttcttagaggatatgatattattgtgaatagagtaatataaacatcatatgtattaaaataattgtttcaagtcaccttaactaatgccca 24883757  T
Q  200 tatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatctgt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883756 tatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatctgt 24883685  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 32590172 - 32590259
Alignment:
Q  182 caccttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct 269  Q
    ||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  32590172 caccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatct 32590259  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 32600620 - 32600707
Alignment:
Q  182 caccttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct 269  Q
    ||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  32600620 caccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatct 32600707  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 34577933 - 34578019
Alignment:
Q  183 accttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct 269  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||    
T  34577933 accttagctaatgcccaaatgctgaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatct 34578019  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 34593767 - 34593853
Alignment:
Q  183 accttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct 269  Q
    |||||| |||| ||||||||||||||||| | ||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  34593767 accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccattcccaacctcaagcatgtcaggatct 34593853  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 27526764 - 27526722
Alignment:
Q  229 ttgtcatacctccatttccaacttcaagcatgtcaggatctgt 271  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  27526764 ttgtcatccctccatttccaacctcaagcatgtcaggatctgt 27526722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 27532418 - 27532376
Alignment:
Q  229 ttgtcatacctccatttccaacttcaagcatgtcaggatctgt 271  Q
    ||||||| |||||||||||||| |||||||| |||||||||||    
T  27532418 ttgtcatccctccatttccaacctcaagcatatcaggatctgt 27532376  T

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