View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_82 (Length: 278)

Name: NF1213_low_82
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_82
NF1213_low_82
[»] chr8 (10 HSPs)
chr8 (56-242)||(45108585-45108765)
chr8 (182-219)||(21467522-21467559)
chr8 (175-222)||(23262843-23262890)
chr8 (92-138)||(13592765-13592811)
chr8 (189-222)||(26628999-26629032)
chr8 (189-222)||(32195023-32195056)
chr8 (182-222)||(16880953-16880993)
chr8 (92-144)||(26629130-26629182)
chr8 (92-132)||(40380280-40380320)
chr8 (190-222)||(43066484-43066516)
[»] chr4 (5 HSPs)
chr4 (182-222)||(13140193-13140233)
chr4 (96-138)||(13140327-13140369)
chr4 (94-140)||(32871853-32871899)
chr4 (90-144)||(40293237-40293291)
chr4 (189-217)||(1015125-1015153)
[»] chr7 (6 HSPs)
chr7 (182-223)||(11813486-11813527)
chr7 (182-222)||(34820737-34820777)
chr7 (190-220)||(2849415-2849445)
chr7 (182-222)||(27305915-27305955)
chr7 (91-131)||(40693561-40693601)
chr7 (82-138)||(48395237-48395293)
[»] chr5 (9 HSPs)
chr5 (183-222)||(30838255-30838294)
chr5 (92-138)||(30838391-30838437)
chr5 (88-140)||(844031-844083)
chr5 (92-135)||(14780450-14780493)
chr5 (93-138)||(2629818-2629863)
chr5 (93-130)||(12349781-12349818)
chr5 (189-222)||(35165830-35165863)
chr5 (185-217)||(14062730-14062762)
chr5 (117-145)||(15022261-15022289)
[»] chr2 (11 HSPs)
chr2 (91-138)||(31415241-31415288)
chr2 (189-222)||(22966934-22966967)
chr2 (188-221)||(34432388-34432421)
chr2 (182-222)||(31415105-31415145)
chr2 (93-140)||(15123960-15124007)
chr2 (189-219)||(39801060-39801090)
chr2 (93-134)||(22303203-22303244)
chr2 (190-222)||(13453845-13453877)
chr2 (189-217)||(15610729-15610757)
chr2 (92-140)||(18423785-18423833)
chr2 (94-138)||(39147766-39147810)
[»] chr3 (2 HSPs)
chr3 (90-132)||(34900637-34900679)
chr3 (92-132)||(50559244-50559284)
[»] chr1 (3 HSPs)
chr1 (92-134)||(7078530-7078572)
chr1 (92-138)||(35883633-35883679)
chr1 (189-222)||(35883497-35883530)
[»] scaffold0086 (1 HSPs)
scaffold0086 (189-222)||(15725-15758)
[»] chr6 (3 HSPs)
chr6 (189-222)||(6256578-6256611)
chr6 (189-222)||(10944428-10944461)
chr6 (189-222)||(31204700-31204733)
[»] scaffold0016 (1 HSPs)
scaffold0016 (92-132)||(204477-204517)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 45108765 - 45108585
Alignment:
Q  56 atatttatgtgattctaagcattagcctttatacatagagaaatgatacttgtacgtctattttttgacaacttttgaaacaatcctcttcattattttt 155  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  45108765 atatttgtgtgattctaagcattagcctttatacatatagaaatgatatttgtacatctattttttgacaacttttgaaacaattctctccattattttt 45108666  T
Q  156 gtccaatacatnnnnnnngtagttaccacaagagttgtacaaaattggttgtacaaatatcactccttaattcatttttctgtggtg 242  Q
    |||||| | |        ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45108665 gtccaaaaaa------aagtaattatcacaagagttgtacaaaattggttgtacaaatatcactccttaattcatttttctttggtg 45108585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 21467522 - 21467559
Alignment:
Q  182 cacaagagttgtacaaaattggttgtacaaatatcact 219  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21467522 cacaagagttgtacaaaattggttgtacaaatatcact 21467559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 23262843 - 23262890
Alignment:
Q  175 tagttaccacaagagttgtacaaaattggttgtacaaatatcactcct 222  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  23262843 tagttatcacaaaagttgtacaaaattggttgtaaaaatatcactcct 23262890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 13592765 - 13592811
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttgaaacaa 138  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||    
T  13592765 agagaaatgatatttgtacacctattttttgacaacttttgaaacaa 13592811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 26629032 - 26628999
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||||||||||||||||||||||||||||||||    
T  26629032 gttgtacaaaattggttgtacaaatatcactcct 26628999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 32195023 - 32195056
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||||||||||||||||||||||||| ||||||    
T  32195023 gttgtacaaaattggttgtacaaatataactcct 32195056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 16880993 - 16880953
Alignment:
Q  182 cacaagagttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||| |||||||||||||| ||||| ||||||||||||||    
T  16880993 cacaaaagttgtacaaaattagttgtgcaaatatcactcct 16880953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 26629182 - 26629130
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttgaaacaatcctct 144  Q
    |||||||||||| ||||||  | | |||||||||||||||||||||| |||||    
T  26629182 agagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctct 26629130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 40380280 - 40380320
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttg 132  Q
    |||||||||||| |||||| |||||||| ||||||||||||    
T  40380280 agagaaatgatatttgtacatctattttatgacaacttttg 40380320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 43066516 - 43066484
Alignment:
Q  190 ttgtacaaaattggttgtacaaatatcactcct 222  Q
    |||||||||||| ||||||||||||||||||||    
T  43066516 ttgtacaaaattagttgtacaaatatcactcct 43066484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 13140233 - 13140193
Alignment:
Q  182 cacaagagttgtacaaaattggttgtacaaatatcactcct 222  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13140233 cacaagagttgtacaaaattggttgtacaaatatcactcct 13140193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 13140369 - 13140327
Alignment:
Q  96 aaatgatacttgtacgtctattttttgacaacttttgaaacaa 138  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  13140369 aaatgatatttgtacatctattttttgacaacttttgaaacaa 13140327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 32871899 - 32871853
Alignment:
Q  94 agaaatgatacttgtacgtctattttttgacaacttttgaaacaatc 140  Q
    |||||||||| ||||||  |||||| |||||||||||||||||||||    
T  32871899 agaaatgatatttgtaccactatttcttgacaacttttgaaacaatc 32871853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 40293237 - 40293291
Alignment:
Q  90 atagagaaatgatacttgtacgtctattttttgacaacttttgaaacaatcctct 144  Q
    |||||| ||||||| |||||| || |||||||||||| ||||||||||| |||||    
T  40293237 atagaggaatgatatttgtacatcaattttttgacaatttttgaaacaaccctct 40293291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 1015125 - 1015153
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatca 217  Q
    |||||||||||||||||||||||||||||    
T  1015125 gttgtacaaaattggttgtacaaatatca 1015153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 11813486 - 11813527
Alignment:
Q  182 cacaagagttgtacaaaattggttgtacaaatatcactcctt 223  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  11813486 cacaagagttatacaaaattggttgtacaaatatcactcctt 11813527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 34820737 - 34820777
Alignment:
Q  182 cacaagagttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  34820737 cacaagagttgtacaaaattgattgtgcaaatatcactcct 34820777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 220
Target Start/End: Complemental strand, 2849445 - 2849415
Alignment:
Q  190 ttgtacaaaattggttgtacaaatatcactc 220  Q
    |||||||||||||||||||||||||||||||    
T  2849445 ttgtacaaaattggttgtacaaatatcactc 2849415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 27305955 - 27305915
Alignment:
Q  182 cacaagagttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  27305955 cacaaaagttgtacaaaattgattgtataaatatcactcct 27305915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 40693601 - 40693561
Alignment:
Q  91 tagagaaatgatacttgtacgtctattttttgacaactttt 131  Q
    ||||||||||||| ||||||  |||||||||||||||||||    
T  40693601 tagagaaatgatatttgtacaactattttttgacaactttt 40693561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 48395237 - 48395293
Alignment:
Q  82 ctttatacatagagaaatgatacttgtacgtctattttttgacaacttttgaaacaa 138  Q
    |||| |||| |||||||||||| ||||||  | | ||||||||||||||||||||||    
T  48395237 ctttttacaaagagaaatgatatttgtacaaccactttttgacaacttttgaaacaa 48395293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 30838294 - 30838255
Alignment:
Q  183 acaagagttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  30838294 acaagagttgtacaaaattggctgtacaaatatcactcct 30838255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 30838437 - 30838391
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttgaaacaa 138  Q
    |||||||||||| |||||| |||| ||||||||||||||||||||||    
T  30838437 agagaaatgatatttgtacatctactttttgacaacttttgaaacaa 30838391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 844031 - 844083
Alignment:
Q  88 acatagagaaatgatacttgtacgtctattttttgacaacttttgaaacaatc 140  Q
    |||||||||||||||| ||| ||  | ||||||||||||||||||||||||||    
T  844031 acatagagaaatgatatttgcacaaccattttttgacaacttttgaaacaatc 844083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 14780493 - 14780450
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttgaaa 135  Q
    |||||||||||| |||||| |||| |||||||||||||||||||    
T  14780493 agagaaatgatatttgtacatctactttttgacaacttttgaaa 14780450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 2629818 - 2629863
Alignment:
Q  93 gagaaatgatacttgtacgtctattttttgacaacttttgaaacaa 138  Q
    ||||||||||| ||||||  | ||||||||||||||||||||||||    
T  2629818 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaa 2629863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 12349781 - 12349818
Alignment:
Q  93 gagaaatgatacttgtacgtctattttttgacaacttt 130  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  12349781 gagaaatgatacttgtacgaccattttttgacaacttt 12349818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 35165830 - 35165863
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcactcct 222  Q
    |||||| |||||||||||||||||||||||||||    
T  35165830 gttgtataaaattggttgtacaaatatcactcct 35165863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 14062762 - 14062730
Alignment:
Q  185 aagagttgtacaaaattggttgtacaaatatca 217  Q
    |||||||||||||||||||||||| ||||||||    
T  14062762 aagagttgtacaaaattggttgtataaatatca 14062730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 15022289 - 15022261
Alignment:
Q  117 tttttgacaacttttgaaacaatcctctt 145  Q
    |||||||||||||||||||||||||||||    
T  15022289 tttttgacaacttttgaaacaatcctctt 15022261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 31415288 - 31415241
Alignment:
Q  91 tagagaaatgatacttgtacgtctattttttgacaacttttgaaacaa 138  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||    
T  31415288 tagagaaatgatatttgtacgtttactttttgacaacttttgaaacaa 31415241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 22966934 - 22966967
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||||||||||||||||||||||||||||||||    
T  22966934 gttgtacaaaattggttgtacaaatatcactcct 22966967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 34432421 - 34432388
Alignment:
Q  188 agttgtacaaaattggttgtacaaatatcactcc 221  Q
    ||||||||||||||||||||||||||||||||||    
T  34432421 agttgtacaaaattggttgtacaaatatcactcc 34432388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 31415145 - 31415105
Alignment:
Q  182 cacaagagttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  31415145 cacaagagttgtacaaaattggttgtataaatattactcct 31415105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 15124007 - 15123960
Alignment:
Q  93 gagaaatgatacttgtacgtctattttttgacaacttttgaaacaatc 140  Q
    ||||||||||| ||||||  | ||||||||||||||||||||||||||    
T  15124007 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaatc 15123960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 39801090 - 39801060
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcact 219  Q
    |||||||||||||||||||||||||||||||    
T  39801090 gttgtacaaaattggttgtacaaatatcact 39801060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 22303203 - 22303244
Alignment:
Q  93 gagaaatgatacttgtacgtctattttttgacaacttttgaa 134  Q
    ||||||||||| ||||||  ||||||||||||||||||||||    
T  22303203 gagaaatgatatttgtacaactattttttgacaacttttgaa 22303244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 13453877 - 13453845
Alignment:
Q  190 ttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||| |||||||||||||||||||||||||||    
T  13453877 ttgtataaaattggttgtacaaatatcactcct 13453845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 15610757 - 15610729
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatca 217  Q
    |||||||||||||||||||||||||||||    
T  15610757 gttgtacaaaattggttgtacaaatatca 15610729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 18423833 - 18423785
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttgaaacaatc 140  Q
    |||||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  18423833 agagaaatgatatttgtacatctattttttgatatcttttaaaacaatc 18423785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 39147766 - 39147810
Alignment:
Q  94 agaaatgatacttgtacgtctattttttgacaacttttgaaacaa 138  Q
    |||||||||||||||||  ||||||||| |||||||||| |||||    
T  39147766 agaaatgatacttgtacaactatttttttacaacttttgtaacaa 39147810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 34900637 - 34900679
Alignment:
Q  90 atagagaaatgatacttgtacgtctattttttgacaacttttg 132  Q
    |||||||||||||| |||||| |||||||| ||||||||||||    
T  34900637 atagagaaatgataattgtacatctattttatgacaacttttg 34900679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 50559284 - 50559244
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttg 132  Q
    |||||||||||| ||||||  ||||||||||||||||||||    
T  50559284 agagaaatgatatttgtacaactattttttgacaacttttg 50559244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 7078572 - 7078530
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttgaa 134  Q
    |||||||||||| |||||| |||||||| ||||||||||||||    
T  7078572 agagaaatgatatttgtacatctattttgtgacaacttttgaa 7078530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 35883679 - 35883633
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttgaaacaa 138  Q
    |||||||||||| ||||||   |||||||||||||||||||||||||    
T  35883679 agagaaatgatatttgtacaattattttttgacaacttttgaaacaa 35883633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 35883530 - 35883497
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||||||||||||||||||||||||| ||||||    
T  35883530 gttgtacaaaattggttgtacaaatattactcct 35883497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 15758 - 15725
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcactcct 222  Q
    |||||| |||||||||||||||||||||||||||    
T  15758 gttgtataaaattggttgtacaaatatcactcct 15725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 6256578 - 6256611
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||||||||||| ||||||||||||||||||||    
T  6256578 gttgtacaaaattagttgtacaaatatcactcct 6256611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 10944461 - 10944428
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcactcct 222  Q
    ||||||||||||||||||||||||||| ||||||    
T  10944461 gttgtacaaaattggttgtacaaatattactcct 10944428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 31204733 - 31204700
Alignment:
Q  189 gttgtacaaaattggttgtacaaatatcactcct 222  Q
    |||||||||||||| |||||||||||||||||||    
T  31204733 gttgtacaaaattgattgtacaaatatcactcct 31204700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 204517 - 204477
Alignment:
Q  92 agagaaatgatacttgtacgtctattttttgacaacttttg 132  Q
    |||||||||||| |||||| |||||||| ||||||||||||    
T  204517 agagaaatgatatttgtacatctattttctgacaacttttg 204477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University