View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_85 (Length: 270)
Name: NF1213_low_85
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 48062702 - 48062872
Alignment:
| Q |
1 |
tatgacctctgacagatatgccattttccttagcaaatttcagcatggcatctgggatagtatagttttcatggccttggattttctctgtactatacca |
100 |
Q |
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| T |
48062702 |
tatgacctctgacagatatgccattttccttagcaaatttcagcatggcatctgggatagtatagttttcatggccttggattttctctgtactatacca |
48062801 |
T |
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| Q |
101 |
cttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaaccatttctggtagtcactgtttgtga |
171 |
Q |
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| T |
48062802 |
cttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaaccatttctggtagtcactgtttgtga |
48062872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 48066792 - 48066967
Alignment:
| Q |
2 |
atgacctctgacagatatgccattttccttagcaaatttcagcatggcatctgggatagtatagttttcatggccttggattttctctgtactataccac |
101 |
Q |
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| T |
48066792 |
atgacctctgacagaaatgccattttctttggcaaatttcagcatggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccac |
48066891 |
T |
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| Q |
102 |
ttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaaccatttctggtagtcactgtttgtgatgatgt |
177 |
Q |
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| T |
48066892 |
ttcatctcattagtgaaagttgtgtacttgaatcttgacacaaaccatttctggtactcaatgtttgtgaggatgt |
48066967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 48099736 - 48099892
Alignment:
| Q |
1 |
tatgacctctgacagatatgccattttccttagcaaatttcagcatggcatctgggatagtatagttttcatggccttggattttctctgtactatacca |
100 |
Q |
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|||||||||||||||| ||||||||||| || || ||||||| ||||||||||||||||||||||||||| |||||||| | | |||||||||||||||| |
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| T |
48099736 |
tatgacctctgacagaaatgccattttctttggcgaatttcatcatggcatctgggatagtatagttttcctggccttgaaatctctctgtactatacca |
48099835 |
T |
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| Q |
101 |
cttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaaccatttctggta |
157 |
Q |
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| T |
48099836 |
cttcatctcattagtaaaagctgtgtacttgaatcttgacacaaaccatctctggta |
48099892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 48106337 - 48106507
Alignment:
| Q |
1 |
tatgacctctgacagatatgccattttccttagcaaatttcagcatggcatctgggatagtatagttttcatggccttggattttctctgtactatacca |
100 |
Q |
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|||||||||||||||| || ||||| || |||||||||| | ||| ||||||| |||||| |||||||| |||||| | ||| | |||||||||||||| |
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| T |
48106337 |
tatgacctctgacagaaattccattatctttagcaaattctaacattgcatctgagatagtgtagttttcttggcctggaattatttctgtactatacca |
48106436 |
T |
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| Q |
101 |
cttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaaccatttctggtagtcactgtttgtga |
171 |
Q |
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||||| || || ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
48106437 |
tttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaatgtttgtga |
48106507 |
T |
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