View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_87 (Length: 264)
Name: NF1213_low_87
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 3789791 - 3790055
Alignment:
| Q |
1 |
ccatgggaagtttgttgtgttcatcataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatgaa |
100 |
Q |
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| T |
3789791 |
ccatgggaagtttgttgtgttcatcataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatgaa |
3789890 |
T |
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| Q |
101 |
gtattctat--gttaatctcaacctcagctcgaaattatgttatatcggaaattagtaacaaaagagtatagaaacatatatcacaaacaatggaacatg |
198 |
Q |
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| T |
3789891 |
gtattctatatgttaatctcaacctaagctcgaaattatgttacatcagaaattagtaacaaaagagtatagaaacatatatcacaaacaatggaacatg |
3789990 |
T |
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| Q |
199 |
atcaattgtttatgcaattcagccacgtgtatgcctaccactgcgactaaagagtagcagtagtt |
263 |
Q |
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| T |
3789991 |
atcaattctttatgcaattcagccacgtgtatgcctaccactgcgactaaagagtagcagtagtt |
3790055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 3800313 - 3800118
Alignment:
| Q |
1 |
ccatgggaagtttgttgtgttcatcataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatgaa |
100 |
Q |
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| T |
3800313 |
ccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaatgccaaaacgagatcatgaa |
3800214 |
T |
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| Q |
101 |
gtattctatgttaatctcaacctcagctcgaaattatgttatatcggaaattagtaacaaaagagtatagaaacatatatcacaaacaatggaaca |
196 |
Q |
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| T |
3800213 |
atatttgatgttgaactcaaccaaagctcgaaattatgttacctcaacaactagtaacaaaagattaaagagacagaaatcataaacaatgaaaca |
3800118 |
T |
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