View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_88 (Length: 262)
Name: NF1213_low_88
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 30276629 - 30276464
Alignment:
| Q |
1 |
ccgccaagcgaattagaagctcttatcaatgatgtttcagaaaaactggatattctcatgtcagaaaacaaactagatgaagccttacaactcctagaat |
100 |
Q |
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| T |
30276629 |
ccgccaagcgaattagaagctcttatcaatgatgtttcagaaaaactggatattctcatgtcagaaaacaaactagatgaagccttacaactcctagagt |
30276530 |
T |
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| Q |
101 |
ctgcatatgaagatgaatccctaactaatagtgatgatgagataatcttatataacactatgattt |
166 |
Q |
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| T |
30276529 |
ctgcatatgaagatgaatccctaactaatagtgatgatgagataatcttatataacactatgattt |
30276464 |
T |
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