View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_90 (Length: 261)

Name: NF1213_low_90
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_90
NF1213_low_90
[»] chr6 (26 HSPs)
chr6 (30-240)||(24942313-24942523)
chr6 (103-240)||(24934780-24934917)
chr6 (111-240)||(29949654-29949783)
chr6 (103-240)||(30135239-30135376)
chr6 (124-240)||(30053540-30053656)
chr6 (110-240)||(30577524-30577654)
chr6 (171-240)||(29953511-29953580)
chr6 (103-240)||(30149640-30149777)
chr6 (118-209)||(24898221-24898312)
chr6 (115-240)||(21160386-21160511)
chr6 (115-240)||(24738956-24739081)
chr6 (34-106)||(21160279-21160351)
chr6 (51-106)||(24934940-24934995)
chr6 (34-96)||(24738849-24738911)
chr6 (38-106)||(30135399-30135467)
chr6 (171-232)||(29898194-29898255)
chr6 (39-91)||(29949556-29949608)
chr6 (39-91)||(29953353-29953405)
chr6 (52-106)||(29085291-29085345)
chr6 (155-220)||(15726990-15727055)
chr6 (43-100)||(24889909-24889966)
chr6 (49-106)||(29211062-29211119)
chr6 (50-106)||(29835488-29835544)
chr6 (50-106)||(29866922-29866978)
chr6 (50-106)||(29887570-29887626)
chr6 (50-106)||(29894826-29894882)
[»] chr4 (2 HSPs)
chr4 (103-240)||(44262342-44262479)
chr4 (35-106)||(44262248-44262319)
[»] chr3 (1 HSPs)
chr3 (113-236)||(24226937-24227060)
[»] chr8 (1 HSPs)
chr8 (113-240)||(9782652-9782779)
[»] scaffold0110 (2 HSPs)
scaffold0110 (144-238)||(43659-43753)
scaffold0110 (42-91)||(43531-43580)
[»] chr1 (2 HSPs)
chr1 (175-236)||(17251430-17251491)
chr1 (51-106)||(17251586-17251641)
[»] scaffold0429 (1 HSPs)
scaffold0429 (138-240)||(6309-6411)
[»] scaffold0177 (1 HSPs)
scaffold0177 (138-240)||(27466-27568)
[»] scaffold0014 (2 HSPs)
scaffold0014 (155-239)||(140379-140463)
scaffold0014 (155-240)||(137487-137572)
[»] scaffold0308 (1 HSPs)
scaffold0308 (155-230)||(9118-9193)
[»] chr7 (1 HSPs)
chr7 (171-202)||(8651416-8651447)
[»] scaffold0572 (1 HSPs)
scaffold0572 (138-240)||(3346-3448)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 24942523 - 24942313
Alignment:
Q  30 acatgattaggggtgcaatcattgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttacattttaacatctaaatgatagccc 129  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24942523 acatgattaggggtgcaaccattgtcttccatttttgacactaaggacaatgcttcatcaaacaagccctttttacattttaacatctaaatgatagccc 24942424  T
Q  130 ttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24942423 ttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaa 24942324  T
Q  230 ttccttggtct 240  Q
    |||||||||||    
T  24942323 ttccttggtct 24942313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 24934917 - 24934780
Alignment:
Q  103 tacattttaacatctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagta 202  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  24934917 tacattttaacatctaaatgatagcccttaataagaagatcctgataaaccgcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagta 24934818  T
Q  203 tagtgtaagtatacatatttggctgaattccttggtct 240  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  24934817 tagtgtaagtataaatatttggctgaattccttggtct 24934780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 29949654 - 29949783
Alignment:
Q  111 aacatctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaa 210  Q
    ||||| |||| |||| ||||||   |||||||  ||||||| | ||||||||| || || |||||||||||||||||||||||||||||||||||||||     
T  29949654 aacatttaaaggataacccttagtcagaagatcatgataaatctcttgtgcatcctcaagtcttccatttttgcatagtccatcaacaagtatagtgtat 29949753  T
Q  211 gtatacatatttggctgaattccttggtct 240  Q
    ||||||||||||||||||||||||||||||    
T  29949754 gtatacatatttggctgaattccttggtct 29949783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 30135376 - 30135239
Alignment:
Q  103 tacattttaacatctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagta 202  Q
    |||||| |||||||||||||||| |||||||  |||||||  ||||||||||||| ||||| ||||| | ||||||||||||||| ||||||||||||||    
T  30135376 tacattataacatctaaatgatatcccttaatcagaagatcttgataaaccgcttttgcatccttaagttttccatttttgcatattccatcaacaagta 30135277  T
Q  203 tagtgtaagtatacatatttggctgaattccttggtct 240  Q
      ||||| ||||||| |||||||||||| |||||||||    
T  30135276 atgtgtatgtatacaaatttggctgaataccttggtct 30135239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 30053656 - 30053540
Alignment:
Q  124 tagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttg 223  Q
    ||||||||| | ||||||| |||||||| |  |||||||| ||||| ||||||||||||||||||||||||||||||| | ||||| ||| |||||| ||    
T  30053656 tagcccttacatagaagatcctgataaatcctttgtgcatccttaagtcttccatttttgcatagtccatcaacaagtgttgtgtatgtaaacatatctg 30053557  T
Q  224 gctgaattccttggtct 240  Q
    |||||||||||| ||||    
T  30053556 gctgaattccttcgtct 30053540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 30577524 - 30577654
Alignment:
Q  110 taacatctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgta 209  Q
    ||||||||||| ||||||||||||  |||||||  ||| ||| | ||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||    
T  30577524 taacatctaaacgatagcccttaatcagaagatcatgaaaaatctcttgtgcatccttaagtcttccatttttgcacagtccatcaacaagtatattgta 30577623  T
Q  210 agtatacatatttggctgaattccttggtct 240  Q
     |||  ||||||||||| || ||||| ||||    
T  30577624 tgtaaccatatttggctcaaatcctttgtct 30577654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 29953511 - 29953580
Alignment:
Q  171 tcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaattccttggtct 240  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  29953511 tcttccatttttgcatagcccatcaacaagtatagtgtatgtatacatatttggctgaatcccttggtct 29953580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 30149777 - 30149640
Alignment:
Q  103 tacattttaacatctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagta 202  Q
    ||||| ||| |||||||||||||||| ||||    ||||| | |||||||  ||||||||| || || |||||| ||||||||||||||| ||| |||||    
T  30149777 tacatcttagcatctaaatgatagcctttaatcgtaagatcccgataaacttcttgtgcatcctcaagtcttccgtttttgcatagtccaacaaaaagta 30149678  T
Q  203 tagtgtaagtatacatatttggctgaattccttggtct 240  Q
    ||||||| | ||||||| ||||||||||||| ||||||    
T  30149677 tagtgtatgaatacatacttggctgaattccctggtct 30149640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 24898312 - 24898221
Alignment:
Q  118 aaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgta 209  Q
    ||||||||||||||||  | ||||| | |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| || |||||    
T  24898312 aaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgta 24898221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 21160386 - 21160511
Alignment:
Q  115 tctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtat 214  Q
    |||||||||||||| ||||  | ||||  |||||| ||| |||| || | ||||| |||||||||||||||||  |||||||||||||| ||||| ||||    
T  21160386 tctaaatgatagcctttaatcaaaagaatctgatagacctcttgcgcgtccttaagtcttccatttttgcataaaccatcaacaagtattgtgtatgtat 21160485  T
Q  215 acatatttggctgaattccttggtct 240  Q
    | ||||  ||||||||||||||||||    
T  21160486 atatatacggctgaattccttggtct 21160511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 24738956 - 24739081
Alignment:
Q  115 tctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtat 214  Q
    |||||||||||||| ||||  | ||||  |||||||||| |||| || | ||| | |||||||||||||||||  |||||||||||||| ||||| ||||    
T  24738956 tctaaatgatagcctttaatcaaaagaatctgataaacctcttgcgcgtccttgagtcttccatttttgcataaaccatcaacaagtattgtgtatgtat 24739055  T
Q  215 acatatttggctgaattccttggtct 240  Q
    | ||||  ||||||||||||||||||    
T  24739056 atatatccggctgaattccttggtct 24739081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 21160279 - 21160351
Alignment:
Q  34 gattaggggtgcaatcattgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||| ||||||| || ||||||    
T  21160279 gattaggggtgcaaccattgtctttcatttttgacagtaaggataatgctttatcgaacaagctctctttaca 21160351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 24934995 - 24934940
Alignment:
Q  51 ttgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  24934995 ttgtcttccatttttgacactaaggacagtgcttcatcaaacaagccctctttaca 24934940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 24738849 - 24738911
Alignment:
Q  34 gattaggggtgcaatcattgtcttccatttttgacactaaggataatgcttcatcaaacaagc 96  Q
    |||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| |||||||    
T  24738849 gattaggggtgcaaccattgtcttccatttttgacagtaaggacaatgctttatcgaacaagc 24738911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 30135467 - 30135399
Alignment:
Q  38 aggggtgcaatcattgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||||||||  |||| |||||||||||||| || ||| ||||||||||||||||| |||| ||||||    
T  30135467 aggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctctttaca 30135399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 29898255 - 29898194
Alignment:
Q  171 tcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaattc 232  Q
    |||||||||||| |||||||||||||||||| | ||||| ||| | |||| |||||||||||    
T  29898255 tcttccatttttccatagtccatcaacaagtgttgtgtatgtacaaatatctggctgaattc 29898194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 29949556 - 29949608
Alignment:
Q  39 ggggtgcaatcattgtcttccatttttgacactaaggataatgcttcatcaaa 91  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||| || |||||    
T  29949556 ggggtgcaaccattgtcttccatttttgacagtaaggacaatgcctcgtcaaa 29949608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 29953353 - 29953405
Alignment:
Q  39 ggggtgcaatcattgtcttccatttttgacactaaggataatgcttcatcaaa 91  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||| || |||||    
T  29953353 ggggtgcaaccattgtcttccatttttgacagtaaggacaatgcctcgtcaaa 29953405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 29085345 - 29085291
Alignment:
Q  52 tgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||| |||||||||||  || || ||||||||||||||||||||||| |||||    
T  29085345 tgtctttcatttttgacaacaaagacaatgcttcatcaaacaagcccttcttaca 29085291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 15726990 - 15727055
Alignment:
Q  155 cttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatat 220  Q
    ||||||||| ||||| |||||| | ||||||||||||||| | ||||||| | || ||||||||||    
T  15726990 cttgtgcatccttaagtcttccttgtttgcatagtccatcgataagtatactatatgtatacatat 15727055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 24889909 - 24889966
Alignment:
Q  43 tgcaatcattgtcttccatttttgacactaaggataatgcttcatcaaacaagccctt 100  Q
    ||||| |||||||||||||||||||||  ||||  ||||||| |||||| ||||||||    
T  24889909 tgcaaccattgtcttccatttttgacagcaaggccaatgctttatcaaagaagccctt 24889966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 29211062 - 29211119
Alignment:
Q  49 cattgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||| ||||||||||||||||  ||||   |||||||||||||||||||||| |||||    
T  29211062 cattctcttccatttttgacagcaaggccgatgcttcatcaaacaagcccttcttaca 29211119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 29835544 - 29835488
Alignment:
Q  50 attgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||||| |||||||||||  || |  ||||||||||||||||||||||| |||||    
T  29835544 attgtctttcatttttgacaacaaagccaatgcttcatcaaacaagcccttgttaca 29835488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 29866978 - 29866922
Alignment:
Q  50 attgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||||| |||||||||||  || |  ||||||||||||||||||||||| |||||    
T  29866978 attgtctttcatttttgacaacaaagccaatgcttcatcaaacaagcccttgttaca 29866922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 29887626 - 29887570
Alignment:
Q  50 attgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||||| |||||||||||  || |  ||||||||||||||||||||||| |||||    
T  29887626 attgtctttcatttttgacaacaaagccaatgcttcatcaaacaagcccttgttaca 29887570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 29894882 - 29894826
Alignment:
Q  50 attgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||||| |||||||||||  || |  ||||||||||||||||||||||| |||||    
T  29894882 attgtctttcatttttgacaacaaagtcaatgcttcatcaaacaagcccttgttaca 29894826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 44262342 - 44262479
Alignment:
Q  103 tacattttaacatctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagta 202  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  44262342 tacattttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtcttccatttttgcatagtccgtcaacaagta 44262441  T
Q  203 tagtgtaagtatacatatttggctgaattccttggtct 240  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44262442 tagtgtaagtatacatatttggctgaattccttggtct 44262479  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 44262248 - 44262319
Alignment:
Q  35 attaggggtgcaatcattgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||||||||||   |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  44262248 attaggggtgcaactgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttaca 44262319  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 24227060 - 24226937
Alignment:
Q  113 catctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagt 212  Q
    ||||||| |||||||| |||   ||||||| |||||||||| ||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||| ||    
T  24227060 catctaactgatagcctttattcagaagatcctgataaacctcttgtgcatccctaagtcttccatttttgcacagtccatcaacaagtatagtgtatgt 24226961  T
Q  213 atacatatttggctgaattccttg 236  Q
    ||| ||||||||| ||||||||||    
T  24226960 atagatatttggccgaattccttg 24226937  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 9782779 - 9782652
Alignment:
Q  113 catctaaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagt 212  Q
    ||||||||||||| || ||||    ||||| | ||||||||  |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||    
T  9782779 catctaaatgataacctttaatcgtaagatcccgataaaccctttgtgcatccttaagtcttccatttttgcacagtccatcaacaagtatagtgtatgt 9782680  T
Q  213 atacatatttggctgaattccttggtct 240  Q
    | |||||| |||||||||||||| ||||    
T  9782679 acacatatctggctgaattccttcgtct 9782652  T

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Target: scaffold0110 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 43659 - 43753
Alignment:
Q  144 ctgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaattccttggt 238  Q
    |||||||||| ||||||||| | ||| | ||||||||||||| ||||||||||||||||||||||| ||||| |||| | |||||||||||||||    
T  43659 ctgataaacctcttgtgcatccctaagttttccatttttgcacagtccatcaacaagtatagtgtatgtatagatatctagctgaattccttggt 43753  T

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Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 43531 - 43580
Alignment:
Q  42 gtgcaatcattgtcttccatttttgacactaaggataatgcttcatcaaa 91  Q
    |||||| | ||||||||||||||||| | |||||| ||||||||||||||    
T  43531 gtgcaaccgttgtcttccatttttgagagtaaggacaatgcttcatcaaa 43580  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 17251491 - 17251430
Alignment:
Q  175 ccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaattccttg 236  Q
    |||| |||||| |||||||||||||||||| |||| ||||||||||||| |||||| |||||    
T  17251491 ccatctttgcaaagtccatcaacaagtatattgtatgtatacatatttgcctgaataccttg 17251430  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 17251641 - 17251586
Alignment:
Q  51 ttgtcttccatttttgacactaaggataatgcttcatcaaacaagccctttttaca 106  Q
    |||||||||||||||||||  ||||  ||||||||||||||||||| || ||||||    
T  17251641 ttgtcttccatttttgacagcaaggtcaatgcttcatcaaacaagctctctttaca 17251586  T

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Target: scaffold0429 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 6411 - 6309
Alignment:
Q  138 aagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaattccttgg 237  Q
    ||||| |||| ||| | ||||||||| |||||  ||||| | ||||||||||||||| | ||||||| |||| || ||||||||| | ||||| ||||||    
T  6411 aagatcctgaaaaatcacttgtgcatccttaagccttccttgtttgcatagtccatcgataagtatattgtatgtgtacatatttagttgaatgccttgg 6312  T
Q  238 tct 240  Q
    |||    
T  6311 tct 6309  T

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Target: scaffold0177 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 27568 - 27466
Alignment:
Q  138 aagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaattccttgg 237  Q
    ||||| |||| ||| | ||||||||| || ||||||||| | ||||||||||||||| | ||||||| |||| || |  |||||||| ||||| ||||||    
T  27568 aagatcctgaaaaatcacttgtgcattctcaaatcttccttctttgcatagtccatcgataagtatattgtacgtgttaatatttggttgaatgccttgg 27469  T
Q  238 tct 240  Q
    |||    
T  27468 tct 27466  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 140463 - 140379
Alignment:
Q  155 cttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaattccttggtc 239  Q
    ||||||||| ||||| || |||   ||||||||||||||||| ||||||| |||| |||||||||| ||| ||||| || |||||    
T  140463 cttgtgcattcttaagtcgtcctcctttgcatagtccatcaataagtatattgtatgtatacatatctggttgaatgccctggtc 140379  T

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Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 137572 - 137487
Alignment:
Q  155 cttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaattccttggtct 240  Q
    ||||||||| ||||| || |||   ||||||||  ||||||| ||||||| |||| || ||||||||||| ||||| |||||||||    
T  137572 cttgtgcattcttaagtcgtcctcctttgcataacccatcaataagtatattgtatgtgtacatatttggttgaatgccttggtct 137487  T

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Target: scaffold0308 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 9193 - 9118
Alignment:
Q  155 cttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaat 230  Q
    ||||||| | ||||| |||||| | ||||||||||||||| | ||||||| |||| || ||||||||||| |||||    
T  9193 cttgtgcgtccttaagtcttccttgtttgcatagtccatcgataagtatattgtatgtgtacatatttggttgaat 9118  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 202
Target Start/End: Complemental strand, 8651447 - 8651416
Alignment:
Q  171 tcttccatttttgcatagtccatcaacaagta 202  Q
    ||||||||||||||||||||||||||||||||    
T  8651447 tcttccatttttgcatagtccatcaacaagta 8651416  T

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Target: scaffold0572 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 3448 - 3346
Alignment:
Q  138 aagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtatacatatttggctgaattccttgg 237  Q
    ||||| |||| ||| | ||||||||| |||||  ||||| | ||||||||||||||| | ||||||| |||| || ||||||| | | ||||| ||||||    
T  3448 aagatcctgaaaaatcacttgtgcatccttaagccttccttgtttgcatagtccatcgataagtatattgtatgtgtacatatctagttgaatgccttgg 3349  T
Q  238 tct 240  Q
    |||    
T  3348 tct 3346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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