View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_95 (Length: 251)

Name: NF1213_low_95
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_95
NF1213_low_95
[»] chr7 (3 HSPs)
chr7 (1-240)||(45243499-45243738)
chr7 (1-240)||(45230238-45230471)
chr7 (9-234)||(45237762-45237981)
[»] chr2 (14 HSPs)
chr2 (126-195)||(8579704-8579773)
chr2 (123-184)||(9061355-9061416)
chr2 (123-215)||(9291776-9291868)
chr2 (3-64)||(9328575-9328636)
chr2 (1-81)||(9061244-9061324)
chr2 (3-64)||(9320958-9321019)
chr2 (123-183)||(10347650-10347710)
chr2 (126-220)||(9284389-9284483)
chr2 (126-208)||(9364489-9364571)
chr2 (123-184)||(8573722-8573783)
chr2 (28-81)||(9291902-9291955)
chr2 (165-238)||(12019126-12019198)
chr2 (5-81)||(8573612-8573688)
chr2 (126-238)||(10335688-10335799)
[»] chr1 (5 HSPs)
chr1 (126-239)||(29423096-29423208)
chr1 (1-83)||(29467883-29467965)
chr1 (126-239)||(29467979-29468091)
chr1 (126-208)||(29453503-29453585)
chr1 (126-184)||(29443520-29443578)
[»] chr3 (2 HSPs)
chr3 (7-81)||(37462448-37462522)
chr3 (35-81)||(39427599-39427645)
[»] chr8 (1 HSPs)
chr8 (130-234)||(41966911-41967014)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 45243738 - 45243499
Alignment:
Q  1 tttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgatcgaagtaaagttctgtttgtaacaaatcatgcaagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  45243738 tttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgagtgatcgaagtaaagttctgttggtaacaaatcatgcaagt 45243639  T
Q  101 tacttgtgttgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaat 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45243638 tacttgtattgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattcctactttcaatgaagtaat 45243539  T
Q  201 gatttgtgctgaaagccttggtatcaccttccttacctat 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45243538 gatttgtgctgaaagccttggtatcaccttccttacctat 45243499  T

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Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 45230471 - 45230238
Alignment:
Q  1 tttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgatcgaagtaaagttctgtttgtaacaaatcatgcaagt 100  Q
    ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||||| | ||||||| ||||| | ||||||||||||||||    
T  45230471 tttggttaaatcgtggttcaattttcatttggtatctttgagacctttatgttattcgagtgatcaacgtaaagtactgttggcaacaaatcatgcaagt 45230372  T
Q  101 tacttgtgttgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaat 200  Q
    ||||||| |     ||| ||||| |||||||||||||||||||| |||| |||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  45230371 tacttgttt-----gtaaatccttggaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattcctactttcaatgaagtaat 45230277  T
Q  201 gatttgtgctgaaagccttggtatcaccttccttacctat 240  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  45230276 gatttgtgctgaaagcctt-gtatcaccatccttacctat 45230238  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 45237981 - 45237762
Alignment:
Q  9 aatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgatcgaagtaaagttctgtttgtaacaaatcatgcaagttacttgtg 108  Q
    |||||||||||||||||||| || |||  |||||||||||||||||||  || |||||||||||||||||||| |||||||||||||||| |  | |||     
T  45237981 aatcgtgtttcaattttcatctgaaattgttgaggcctttatgttattcaagcgatcgaagtaaagttctgttggtaacaaatcatgcaactagcatgtc 45237882  T
Q  109 ttgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtg 208  Q
    |     | | ||||||||||| ||||||||||||| ||||| | |||| || ||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  45237881 t-----gcaaatcctaggaagttgttttggtatgacctcaagaatgaacaagttatttatgttcgaggaattcctactttgaatgaagtaatgatttgtg 45237787  T
Q  209 ctgaaagccttggtatcaccttcctt 234  Q
    ||||||||||| ||| ||||||||||    
T  45237786 ctgaaagcctt-gtaccaccttcctt 45237762  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 8579704 - 8579773
Alignment:
Q  126 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaa 195  Q
    |||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||| ||||||||||    
T  8579704 gaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaa 8579773  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 9061355 - 9061416
Alignment:
Q  123 taggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattccta 184  Q
    ||||||||||||||||||||||||||| |||||| || ||| ||||||| ||||||||||||    
T  9061355 taggaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattccta 9061416  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 9291868 - 9291776
Alignment:
Q  123 taggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaag 215  Q
    |||||||||||||||||||||| | || |||||| || ||| ||||||| |||||||||||| |||  ||||||  |||||||||| ||||||    
T  9291868 taggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaag 9291776  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 9328636 - 9328575
Alignment:
Q  3 tggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgat 64  Q
    ||||||||||||||||| |||| | |||| ||||||||||||||||| |||||| |||||||    
T  9328636 tggttaaatcgtgtttccatttacctttgaaatctttgaggcctttaggttatttgagtgat 9328575  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9061244 - 9061324
Alignment:
Q  1 tttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgatcgaagtaaagttctgtt 81  Q
    |||||||||||||||||||||||  | |||||| | ||||||||| ||||||||||  |||||| || |||| ||||||||    
T  9061244 tttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttattctagtgatggaggtaaggttctgtt 9061324  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 9321019 - 9320958
Alignment:
Q  3 tggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgat 64  Q
    ||||||||||||||| | |||| | |||| ||||||||||||||||| |||||| |||||||    
T  9321019 tggttaaatcgtgttacgatttacctttgaaatctttgaggcctttaggttattcgagtgat 9320958  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 10347710 - 10347650
Alignment:
Q  123 taggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcct 183  Q
    |||||||||||||||||||||| | || |||||| || ||| ||||||| |||||||||||    
T  10347710 taggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcct 10347650  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 9284389 - 9284483
Alignment:
Q  126 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttg 220  Q
    ||||||| ||||||||||| | || |||||  || ||| ||||||| |||||||||||| |||  ||||||  |||||||||| |||||| ||||    
T  9284389 gaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttg 9284483  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 9364571 - 9364489
Alignment:
Q  126 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtg 208  Q
    ||||||||||||||| |||||||| |||||| |  |||||  ||||| ||||||||||| | | |||||||  ||||||||||    
T  9364571 gaagctgttttggtacgatctcaagagtgaaaacgttactagtgttccaggaattcctaatatgaatgaagctatgatttgtg 9364489  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 8573722 - 8573783
Alignment:
Q  123 taggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattccta 184  Q
    |||||||||||||||||||||| | || |||||| || | | ||||||| ||||||||||||    
T  8573722 taggaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattccta 8573783  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 9291955 - 9291902
Alignment:
Q  28 tttggaatctttgaggcctttatgttattggagtgatcgaagtaaagttctgtt 81  Q
    |||| ||||||||||||||||||||||||  || ||| ||||||| ||||||||    
T  9291955 tttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgtt 9291902  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 12019126 - 12019198
Alignment:
Q  165 ttatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttggtatcaccttccttacct 238  Q
    ||||||| |||||||||||| |||| ||||||  |||||||||| || ||| ||| ||| ||||||||||||||    
T  12019126 ttatgttgaaggaattcctaatttcgatgaagccatgatttgtgttggaagtctt-gtaccaccttccttacct 12019198  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 8573612 - 8573688
Alignment:
Q  5 gttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgatcgaagtaaagttctgtt 81  Q
    |||||||||||||||| |   |||||  |||||| |||||||||| ||||||  |||||| ||||||| ||||||||    
T  8573612 gttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctagtgatggaagtaaggttctgtt 8573688  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 10335799 - 10335688
Alignment:
Q  126 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttggtatc 225  Q
    |||| |||||||||||||| | || |||||| || ||| ||||||| |||||||||||| |||  ||||    |||||||||| || ||| ||| || ||    
T  10335799 gaagttgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtctt-gtttc 10335701  T
Q  226 accttccttacct 238  Q
    |||||||||||||    
T  10335700 accttccttacct 10335688  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 29423208 - 29423096
Alignment:
Q  126 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttggtatc 225  Q
    |||||||||||||||||||||||| |||||| || ||| || ||||||||||||||||| |||| || |||  |||||||||| || ||| ||| |||||    
T  29423208 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtctt-gtatc 29423110  T
Q  226 accttccttaccta 239  Q
    ||||||||| ||||    
T  29423109 accttccttcccta 29423096  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29467883 - 29467965
Alignment:
Q  1 tttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgatcgaagtaaagttctgtttg 83  Q
    |||||||| ||||||||||| ||| || ||||||||||||||||||||| |||||| ||| ||| ||||||  ||||||||||    
T  29467883 tttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgagcgatggaagtatggttctgtttg 29467965  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 29467979 - 29468091
Alignment:
Q  126 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttggtatc 225  Q
    |||| ||||||||||||||||||| |||||| |  ||| ||||||| |||||||||||| ||| |||||||  |||||||||| || ||| ||| ||| |    
T  29467979 gaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatgaagctatgatttgtgttggaagtctt-gtacc 29468077  T
Q  226 accttccttaccta 239  Q
    ||||||||| ||||    
T  29468078 accttccttcccta 29468091  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 29453503 - 29453585
Alignment:
Q  126 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtg 208  Q
    |||||||||||||||||||||||| |||||| || ||| || |||| |||||||||||| |||| || |||  ||||||||||    
T  29453503 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtg 29453585  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 29443520 - 29443578
Alignment:
Q  126 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattccta 184  Q
    |||||||||||||||||||||||| |||||||   ||| ||||||| ||||||||||||    
T  29443520 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 29443578  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 37462522 - 37462448
Alignment:
Q  7 taaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgatcgaagtaaagttctgtt 81  Q
    |||||||||||||| ||  | |||| ||||||||||||||||||||||||  |||||| ||||||| ||| ||||    
T  37462522 taaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgtt 37462448  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 39427645 - 39427599
Alignment:
Q  35 tctttgaggcctttatgttattggagtgatcgaagtaaagttctgtt 81  Q
    ||||||| ||||||||||||||  |||||| ||||||||||||||||    
T  39427645 tctttgaagcctttatgttattccagtgatagaagtaaagttctgtt 39427599  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 41966911 - 41967014
Alignment:
Q  130 ctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttggtatcacct 229  Q
    ||||||||||||||| | || |||||| || ||||||||||| |||||||||||| |||  ||||||  ||| |||||| || ||| ||| ||| |||||    
T  41966911 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtctt-gtaccacct 41967009  T
Q  230 tcctt 234  Q
    |||||    
T  41967010 tcctt 41967014  T

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