View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12140_high_1 (Length: 756)

Name: NF12140_high_1
Description: NF12140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12140_high_1
NF12140_high_1
[»] scaffold0038 (6 HSPs)
scaffold0038 (56-280)||(41067-41291)
scaffold0038 (206-334)||(25394-25522)
scaffold0038 (306-487)||(42024-42209)
scaffold0038 (373-439)||(25530-25595)
scaffold0038 (658-703)||(25644-25689)
scaffold0038 (61-120)||(25262-25321)
[»] chr6 (12 HSPs)
chr6 (56-280)||(28240905-28241129)
chr6 (344-541)||(28180210-28180407)
chr6 (206-334)||(28224896-28225024)
chr6 (306-487)||(28241862-28242047)
chr6 (235-305)||(28180138-28180208)
chr6 (122-198)||(28156506-28156582)
chr6 (652-703)||(28149140-28149191)
chr6 (124-198)||(28180058-28180132)
chr6 (373-439)||(28225032-28225097)
chr6 (496-541)||(28148927-28148972)
chr6 (658-703)||(28225146-28225191)
chr6 (61-120)||(28224764-28224823)
[»] scaffold0019 (2 HSPs)
scaffold0019 (401-532)||(58778-58906)
scaffold0019 (180-302)||(58923-59045)


Alignment Details
Target: scaffold0038 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 56 - 280
Target Start/End: Original strand, 41067 - 41291
Alignment:
Q  56 cattgaaacactttgtcctgatattacttgagaaattcttgttttgtattattactcactagaattactatttgaatttgaataatttaatcattcaatc 155  Q
    |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41067 cattgaaacattttgtcctgatattacttgagaaattcctgctttgtattattactcactggaattactatttgaatttgaataatttaatcattcaatc 41166  T
Q  156 tgtttttattgttgttaagtttaatctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttg 255  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41167 tgtgtttattgttgtaaagtttaatctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttg 41266  T
Q  256 caaagagcattgaattcaactttgg 280  Q
    |||||||||||||||||||| ||||    
T  41267 caaagagcattgaattcaacattgg 41291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 206 - 334
Target Start/End: Original strand, 25394 - 25522
Alignment:
Q  206 attaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaactttggaggcagttttgcatagattgttgaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  25394 attaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaacattggaggcagtcttgcatagattgttgaa 25493  T
Q  306 tattagcaatgatgtgactggtgctggta 334  Q
    |||||||||||||||||||||||||||||    
T  25494 tattagcaatgatgtgactggtgctggta 25522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 306 - 487
Target Start/End: Original strand, 42024 - 42209
Alignment:
Q  306 tattagcaatgatgtgactggtgctggtacgttgatatatatttcaagaagattttacattatagtctaat------ctgaaccattggctactttgata 399  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||      |||||||||||||||||||||||    
T  42024 tattatcaatgatgtgactggttctggtatgttgatatatatttcaagaagattttactttatagtctaataataatctgaaccattggctactttgata 42123  T
Q  400 tatatgttagactagattgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatg 487  Q
    | ||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||  |||||| ||||||||||||||||    
T  42124 tttatgttagactagattgcacggttcttgatattttcaactttatagttaatatgcttataa--atatttctcagtttcaaataatg 42209  T

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Target: scaffold0038; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 25530 - 25595
Alignment:
Q  373 taatctgaaccattggctactttgatatatatgttagactagattgcacggttcttcatattttcaa 439  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||| || | ||||| ||||||||||    
T  25530 taatctgtaccatttgctactttgatatttatgttagactagatt-catgattcttgatattttcaa 25595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 703
Target Start/End: Original strand, 25644 - 25689
Alignment:
Q  658 gagaataattaagacgaagaatttaaaagatatgcattaatatttt 703  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||    
T  25644 gagaataattaagccgaagaatttaatagatatgcatttatatttt 25689  T

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Target: scaffold0038; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 25262 - 25321
Alignment:
Q  61 aaacactttgtcctgatattacttgagaaattcttgttttgtattattactcactagaat 120  Q
    ||||| ||||||||||||||  ||  ||||||| ||||||||||| ||||||||||||||    
T  25262 aaacattttgtcctgatattcgttaggaaattcatgttttgtattgttactcactagaat 25321  T

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Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 56 - 280
Target Start/End: Original strand, 28240905 - 28241129
Alignment:
Q  56 cattgaaacactttgtcctgatattacttgagaaattcttgttttgtattattactcactagaattactatttgaatttgaataatttaatcattcaatc 155  Q
    |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28240905 cattgaaacattttgtcctgatattacttgagaaattcctgctttgtattattactcactggaattactatttgaatttgaataatttaatcattcaatc 28241004  T
Q  156 tgtttttattgttgttaagtttaatctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttg 255  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28241005 tgtgtttattgttgtaaagtttaatctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttg 28241104  T
Q  256 caaagagcattgaattcaactttgg 280  Q
    |||||||||||||||||||| ||||    
T  28241105 caaagagcattgaattcaacattgg 28241129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 344 - 541
Target Start/End: Original strand, 28180210 - 28180407
Alignment:
Q  344 atatttcaagaagattttacattatagtctaat----ctgaaccattggctactttgatatatatgttagactagattgcacggttcttcatattttcaa 439  Q
    ||||||| || ||||||||||||||||||||||    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  28180210 atatttcgagtagattttacattatagtctaattaatctgaaccattggctactttgatatttatgttagactagattgcacggttcttgatattttcaa 28180309  T
Q  440 ttttatagattatatgcttataaagatatttatcagtttcaaataatgtaaggtcatcaatgattgaaaattgatgataatggtaagagaacatcttacc 539  Q
    |||||||||||||   | ||||||  ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  28180310 ttttatagattatc--catataaa--tatttctcagtttcaaataatgtaaggtcttcaatgattgaaaattgatgataatgctaagagaacatcttacc 28180405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 206 - 334
Target Start/End: Original strand, 28224896 - 28225024
Alignment:
Q  206 attaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaactttggaggcagttttgcatagattgttgaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  28224896 attaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaacattggaggcagtcttgcatagattgttgaa 28224995  T
Q  306 tattagcaatgatgtgactggtgctggta 334  Q
    |||||||||||||||||||||||||||||    
T  28224996 tattagcaatgatgtgactggtgctggta 28225024  T

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Target: chr6; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 306 - 487
Target Start/End: Original strand, 28241862 - 28242047
Alignment:
Q  306 tattagcaatgatgtgactggtgctggtacgttgatatatatttcaagaagattttacattatagtctaat------ctgaaccattggctactttgata 399  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||      |||||||||||||||||||||||    
T  28241862 tattatcaatgatgtgactggttctggtatgttgatatatatttcaagaagattttactttatagtctaataataatctgaaccattggctactttgata 28241961  T
Q  400 tatatgttagactagattgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatg 487  Q
    | ||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||  |||||| ||||||||||||||||    
T  28241962 tttatgttagactagattgcacggttcttgatattttcaactttatagttaatatgcttataa--atatttctcagtttcaaataatg 28242047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 28180138 - 28180208
Alignment:
Q  235 gcaaagatggagtaaatgttgcaaagagcattgaattcaactttggaggcagttttgcatagattgttgaa 305  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||| ||||    
T  28180138 gcaaagatggagtaaatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaa 28180208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 28156506 - 28156582
Alignment:
Q  122 actatttgaatttgaataatttaatcattcaatctgtttttattgttgttaagtttaatctgttttagaggcctaat 198  Q
    ||||| ||||||| ||||||| ||||||||||||||| ||||||||||| ||||||  |||||||||||||| ||||    
T  28156506 actatgtgaatttaaataattcaatcattcaatctgtctttattgttgtgaagtttcctctgttttagaggcataat 28156582  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 652 - 703
Target Start/End: Original strand, 28149140 - 28149191
Alignment:
Q  652 aagtaggagaataattaagacgaagaatttaaaagatatgcattaatatttt 703  Q
    |||||||||||||||||||  |||||||||||||||||||||  ||||||||    
T  28149140 aagtaggagaataattaagttgaagaatttaaaagatatgcaccaatatttt 28149191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 28180058 - 28180132
Alignment:
Q  124 tatttgaatttgaataatttaatcattcaatctgtttttattgttgttaagtttaatctgttttagaggcctaat 198  Q
    ||||||| ||||||||||| ||||||| ||| ||| ||||||||||| ||||||  | ||||| |||||||||||    
T  28180058 tatttgagtttgaataattcaatcattaaatatgtgtttattgttgtgaagtttcctttgtttaagaggcctaat 28180132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 28225032 - 28225097
Alignment:
Q  373 taatctgaaccattggctactttgatatatatgttagactagattgcacggttcttcatattttcaa 439  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||| || | ||||| ||||||||||    
T  28225032 taatctgtaccatttgctactttgatatttatgttagactagatt-catgattcttgatattttcaa 28225097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 28148927 - 28148972
Alignment:
Q  496 tcaatgattgaaaattgatgataatggtaagagaacatcttaccca 541  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||    
T  28148927 tcaatgattgaaaattgatgataatgctatgagaacagcttaccca 28148972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 703
Target Start/End: Original strand, 28225146 - 28225191
Alignment:
Q  658 gagaataattaagacgaagaatttaaaagatatgcattaatatttt 703  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||    
T  28225146 gagaataattaagccgaagaatttaatagatatgcatttatatttt 28225191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 28224764 - 28224823
Alignment:
Q  61 aaacactttgtcctgatattacttgagaaattcttgttttgtattattactcactagaat 120  Q
    ||||| ||||||||||||||  ||  ||||||| ||||||||||| ||||||||||||||    
T  28224764 aaacattttgtcctgatattcgttaggaaattcatgttttgtattgttactcactagaat 28224823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 93; Significance: 7e-45; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 401 - 532
Target Start/End: Complemental strand, 58906 - 58778
Alignment:
Q  401 atatgttagactagattgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatgtaaggtcatcaat 500  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| | ||| |||||    
T  58906 atatgttagactagattgcacggttcttgatattttcaattttatagattatatgcttataa--atatttatcagtttcaaataatgt-acgtcttcaat 58810  T
Q  501 gattgaaaattgatgataatggtaagagaaca 532  Q
    ||||||||||||||||||||| || |||||||    
T  58809 gattgaaaattgatgataatgctatgagaaca 58778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 180 - 302
Target Start/End: Complemental strand, 59045 - 58923
Alignment:
Q  180 tctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaactttg 279  Q
    ||||||| | ||||||||| |||||||||||| |||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||    
T  59045 tctgtttcaaaggcctaatacggtggattaagcaaagttattgtggtcctgctgggcaaagatggagtaaatgttgcaaagagcattgaattcaacattg 58946  T
Q  280 gaggcagttttgcatagattgtt 302  Q
    ||| || | |||||| |||||||    
T  58945 gagccactcttgcattgattgtt 58923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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