View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12140_high_3 (Length: 613)

Name: NF12140_high_3
Description: NF12140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12140_high_3
NF12140_high_3
[»] chr4 (7 HSPs)
chr4 (12-423)||(45734909-45735319)
chr4 (459-594)||(45734738-45734873)
chr4 (12-227)||(45746367-45746575)
chr4 (279-413)||(45746179-45746313)
chr4 (506-591)||(2462893-2462980)
chr4 (506-591)||(2485693-2485780)
chr4 (459-499)||(45745456-45745496)
[»] chr6 (3 HSPs)
chr6 (506-592)||(15565000-15565089)
chr6 (506-592)||(15566953-15567042)
chr6 (506-562)||(8855220-8855279)
[»] chr3 (1 HSPs)
chr3 (506-592)||(3079760-3079849)
[»] chr5 (2 HSPs)
chr5 (506-543)||(30047360-30047397)
chr5 (506-538)||(30067241-30067273)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 45735319 - 45734909
Alignment:
Q  12 aacctgtgttttgcaaagaaaaaccacaatctggtacttgacaaatgacaacatgcaacaacaaagttctatatatgtttgcacatggcccattattata 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45735319 aacctgtgttttgcaaagaaaaaccacaatctagtacttgacaaatgacaacatgcaacaacaaagttctatatatgtttgcacatggcccattattata 45735220  T
Q  112 tatgagtttcattttgatagacgttagtgtaaaataatacatcaacaaatcccaaaactagttatgattgaaatctaacgttttgaatacgacaataatg 211  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45735219 tatgagtttcattttgatagacgtcagtgtaaaataatacatcaacaaatcccaaaactagttatgattgaaatctaacgttttgaatatgacaataatg 45735120  T
Q  212 accgattaacaatatatttnnnnnnntccaaagnnnnnnncaatataannnnnnncacatagacgactgacgattaggattgattgataatataagattg 311  Q
    ||||||||| |||||||||       |||||||       ||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  45735119 accgattaataatatattt-cccccctccaaagaaaaaaacaatataatttttttcacatagacgactgacgattaggattgattgataatataagattg 45735021  T
Q  312 acttacacaggaaaagcaaaagaatcagtactgccttcagattggacaaattcccttgattctgcaaatgtcatctcatagtcttcaattccctcaacct 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45735020 acttacacaggaaaagcaaaagaatcagtactgccttcagattggacacattcccttgattctgcaaatgtcatctcatagtcttcaattccctcaacct 45734921  T
Q  412 gccgaaattaag 423  Q
    ||| ||||||||    
T  45734920 gccaaaattaag 45734909  T

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Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 459 - 594
Target Start/End: Complemental strand, 45734873 - 45734738
Alignment:
Q  459 cactatcacacgagctgatgaagccatttcgtgagcatctgtgtgtcagttttaattcaagttagatggttttaactcaaattagagattaaaacatggt 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45734873 cactatcacacgagctgatgaagccatttcgtgagcatctgtgtgttagttttaattcaagttagatggttttaactcaaattagagattaaaacatggt 45734774  T
Q  559 tagaaagctggttacaagtttgttagatgacttata 594  Q
    ||||||||||||||||||||||||||||||||||||    
T  45734773 tagaaagctggttacaagtttgttagatgacttata 45734738  T

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Target: chr4; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 45746575 - 45746367
Alignment:
Q  12 aacctgtgttttgcaaagaaaaaccacaatctggtacttgacaaatgacaacatgcaacaacaaagttctatatatgttt-gcacatggcccattattat 110  Q
    ||||||||||||||||||||||||||| |||| |||||||||||       |||| |||| ||||||||||||||||||| |||||| | | ||||||||    
T  45746575 aacctgtgttttgcaaagaaaaaccaccatctagtacttgacaa-------catgtaacagcaaagttctatatatgttttgcacatagacgattattat 45746483  T
Q  111 atatgagtttcattttgatagacgttagtgtaaaataatac-atcaacaaatcccaaaactagttatgattgaaatctaacgttttgaatacgacaataa 209  Q
    ||  |||||| |||| |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  45746482 at--gagtttaatttagatacacgttagtgtaaaataacaccatcaacaaatcacaaaactagttatgattgaaatctaacgttttgaatatgacaataa 45746385  T
Q  210 tgaccgattaacaatata 227  Q
    ||||||||||||||||||    
T  45746384 tgaccgattaacaatata 45746367  T

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Target: chr4; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 279 - 413
Target Start/End: Complemental strand, 45746313 - 45746179
Alignment:
Q  279 tgacgattaggattgattgataatataagattgacttacacaggaaaagcaaaagaatcagtactgccttcagattggacaaattcccttgattctgcaa 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |||||    
T  45746313 tgacgattatgattgattgataatataagattgacttacacagggaaagcaaaagaatcagtactgccttcagattggacagagtcccttgattttgcaa 45746214  T
Q  379 atgtcatctcatagtcttcaattccctcaacctgc 413  Q
    ||| |||||||||||||||||||||||||||||||    
T  45746213 atgacatctcatagtcttcaattccctcaacctgc 45746179  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 591
Target Start/End: Complemental strand, 2462980 - 2462893
Alignment:
Q  506 agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgactt 591  Q
    ||||||||||||||||||||||||| ||||||| |||    ||| |||||||||||||||||| | ||||||||||||| |||||||||    
T  2462980 agttttaattcaagttagatggttt-aactcaatttaattaagagtaaaacatggttagaaagtttgttacaagtttgtaagatgactt 2462893  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 591
Target Start/End: Complemental strand, 2485780 - 2485693
Alignment:
Q  506 agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgactt 591  Q
    ||||||||||||||||||||||||| ||||||| |||    ||| |||||||||||||||||| | ||||||||||||| |||||||||    
T  2485780 agttttaattcaagttagatggttt-aactcaatttaattaagagtaaaacatggttagaaagtttgttacaagtttgtaagatgactt 2485693  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 45745496 - 45745456
Alignment:
Q  459 cactatcacacgagctgatgaagccatttcgtgagcatctg 499  Q
    |||||||||||||| ||||||||||||||| | ||||||||    
T  45745496 cactatcacacgaggtgatgaagccatttcatcagcatctg 45745456  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 506 - 592
Target Start/End: Complemental strand, 15565089 - 15565000
Alignment:
Q  506 agttttaattcaagttagatggttttaactcaaatta---gagattaaaacatggttagaaagctggttacaagtttgttagatgactta 592  Q
    ||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  15565089 agttttaattcaagttagatggttttaactcaagttacttgagattaaaacatggttagaaagttggttacaagttttttagatgactta 15565000  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 506 - 592
Target Start/End: Complemental strand, 15567042 - 15566953
Alignment:
Q  506 agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgactta 592  Q
    ||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  15567042 agttttaattcaagttaaatggttttaactcaagttagttgagattaaaacatggttagaaagttggttaaaagtttgttagatgactta 15566953  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 562
Target Start/End: Complemental strand, 8855279 - 8855220
Alignment:
Q  506 agttttaattcaagttagatggttttaactcaaatta---gagattaaaacatggttaga 562  Q
    ||||||||||||||||||||||||||||||||  |||   ||||||||| ||||||||||    
T  8855279 agttttaattcaagttagatggttttaactcatgttagttgagattaaatcatggttaga 8855220  T

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Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 506 - 592
Target Start/End: Complemental strand, 3079849 - 3079760
Alignment:
Q  506 agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgactta 592  Q
    ||||||||||||||||||||||||||||||||| ||||   ||| |||||||||||||||||| | |||||||||| |||||||||||||    
T  3079849 agttttaattcaagttagatggttttaactcaagttagttaagagtaaaacatggttagaaagtttgttacaagttagttagatgactta 3079760  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 30047360 - 30047397
Alignment:
Q  506 agttttaattcaagttagatggttttaactcaaattag 543  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  30047360 agttttaattcaagttagatggttttaactcaagttag 30047397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 538
Target Start/End: Original strand, 30067241 - 30067273
Alignment:
Q  506 agttttaattcaagttagatggttttaactcaa 538  Q
    |||||||||||||||||||||| ||||||||||    
T  30067241 agttttaattcaagttagatgggtttaactcaa 30067273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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