View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12140_high_6 (Length: 378)
Name: NF12140_high_6
Description: NF12140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12140_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 17855932 - 17855569
Alignment:
| Q |
1 |
tttccttgagctttagccagtttgttcctatagtggcgggcgcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17855932 |
tttccttgagctttagccagtttgttcctatagtggcgggcgcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttga |
17855833 |
T |
|
| Q |
101 |
ctctggtttaatagataagggtggcctcatgcacctttggtagcgcccttgctttaggcgcttgtccttatcctaagacaagcgtgattattcttgatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17855832 |
ctctggtttaatagataagggtggcctcatgcacctttggtagcgcccttactttaggcgcttgtccttatcctaagacaagcgtgattattcttgatat |
17855733 |
T |
|
| Q |
201 |
ggcggtccacaaccccccaagcacgagtcctggttaagggcgaagtggttgaacgagatatgatggtccagtaggatttcagcattgccgtctatattat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17855732 |
ggcggtccacaaccccccaagcacgagtcctggttaagggcgaagtggttgaacgagatatgatggtccagtaggatttcagcattgccgtctatattat |
17855633 |
T |
|
| Q |
301 |
ggatgatatatattcttagagtaataaataatgttattgacactagaactggaaccagaacaca |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
17855632 |
ggatgatatatattcttagagtaataaataatgttattgacacaagagctggaaccagaacaca |
17855569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 43116493 - 43116449
Alignment:
| Q |
200 |
tggcggtccacaaccccccaagcacgagtcctggttaagggcgaa |
244 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
43116493 |
tggcggtccacaaccccctaaacatgagtcctggttaagggcgaa |
43116449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 34647318 - 34647103
Alignment:
| Q |
1 |
tttccttgagctttagccagtttgttcctatagtggcgggcgcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttga |
100 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||||||| |
|
|
| T |
34647318 |
tttccttgagctttcgccggtttggtcctataatggcgggcgcgtcaagcttatctgtatccatatgtcttccctaaaggccctggattgagctgtttga |
34647219 |
T |
|
| Q |
101 |
ctctggtttaatagataagggtggcctcatgcacctttggtagcgcccttgcttta-ggcgcttgtccttatcctaagacaagcgtgattattcttgata |
199 |
Q |
| |
|
|| | |||||| ||||||||| |||||| ||| ||||||| |||||||| |||| | ||| ||||||||||||||| || ||||||||||||| |
|
|
| T |
34647218 |
ctttagtttaagagataagggcggcctcgtgcccctttggcggcgcccttattttatgataagtgtgattatcctaagacaagtgtaattattcttgata |
34647119 |
T |
|
| Q |
200 |
tggcggtccacaaccc |
215 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
34647118 |
tggaggtccataaccc |
34647103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 47361851 - 47361897
Alignment:
| Q |
204 |
ggtccacaaccccccaagcacgagtcctggttaagggcgaagtggtt |
250 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47361851 |
ggtccacagccctccaagcacgagtcctggttaagggcgaagtggtt |
47361897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 11919616 - 11919571
Alignment:
| Q |
205 |
gtccacaaccccccaagcacgagtcctggttaagggcgaagtggtt |
250 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
11919616 |
gtccacaaccccccaagcatgagtcctgaataagggcaaagtggtt |
11919571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 33929606 - 33929455
Alignment:
| Q |
24 |
gttcctatagtggcgggcgcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttgactctggtttaatagataagggtg |
123 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||| | |||||||||| |||||||| |||| || || ||| |||| ||||||| ||||||||| |
|
|
| T |
33929606 |
gttcctatagtgacgggcacgtcaagcttatgtgtaaccttatgtctcgcttgaaggccatggatttagcagttcgactttggtttacgagataagggca |
33929507 |
T |
|
| Q |
124 |
gcctcatgcacctttggtagcgcccttgctttaggcgcttgtccttatccta |
175 |
Q |
| |
|
||| | |||||||||||| | || ||| |||||||| ||||| ||||||||| |
|
|
| T |
33929506 |
gccacttgcacctttggttgtgctcttactttaggcacttgttcttatccta |
33929455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University