View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12140_high_7 (Length: 249)
Name: NF12140_high_7
Description: NF12140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12140_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 28036146 - 28035912
Alignment:
| Q |
15 |
gtgctcatgaagattataagcttgttgctcacccaggtactaatcaaacatctaaccaaatgcataatgtcatctctaacacaatagccataaagggaaa |
114 |
Q |
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| T |
28036146 |
gtgctcatgaagattataagcttgttgctcacccaggtactaatcaaacatctaaccaaatgcataatgtcatctctaacacaatagccataaagggaaa |
28036047 |
T |
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| Q |
115 |
taatagtaaggattctaaagaagataatgccaacgatgttgtaaagcacaacatcaacatcaacagccacagccacaataaccacaatgtatctatagcg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28036046 |
taatagtaaggattctaaagaagataatgccaacgatgttgaaaagcacaacatcaacatcaacagccacagccacaataaccacaatgtatctatagcg |
28035947 |
T |
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| Q |
215 |
gggacgagtatcaaagggagagaatttgaagatcc |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28035946 |
gggacgagtatcaaagggagagaatttgaagatcc |
28035912 |
T |
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