View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12140_low_1 (Length: 756)
Name: NF12140_low_1
Description: NF12140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12140_low_1 |
 | |
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| [»] scaffold0038 (6 HSPs) |
| | |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0038 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 56 - 280
Target Start/End: Original strand, 41067 - 41291
Alignment:
| Q |
56 |
cattgaaacactttgtcctgatattacttgagaaattcttgttttgtattattactcactagaattactatttgaatttgaataatttaatcattcaatc |
155 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41067 |
cattgaaacattttgtcctgatattacttgagaaattcctgctttgtattattactcactggaattactatttgaatttgaataatttaatcattcaatc |
41166 |
T |
|
| Q |
156 |
tgtttttattgttgttaagtttaatctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttg |
255 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41167 |
tgtgtttattgttgtaaagtttaatctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttg |
41266 |
T |
|
| Q |
256 |
caaagagcattgaattcaactttgg |
280 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
41267 |
caaagagcattgaattcaacattgg |
41291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 206 - 334
Target Start/End: Original strand, 25394 - 25522
Alignment:
| Q |
206 |
attaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaactttggaggcagttttgcatagattgttgaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
25394 |
attaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaacattggaggcagtcttgcatagattgttgaa |
25493 |
T |
|
| Q |
306 |
tattagcaatgatgtgactggtgctggta |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
25494 |
tattagcaatgatgtgactggtgctggta |
25522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 306 - 487
Target Start/End: Original strand, 42024 - 42209
Alignment:
| Q |
306 |
tattagcaatgatgtgactggtgctggtacgttgatatatatttcaagaagattttacattatagtctaat------ctgaaccattggctactttgata |
399 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
42024 |
tattatcaatgatgtgactggttctggtatgttgatatatatttcaagaagattttactttatagtctaataataatctgaaccattggctactttgata |
42123 |
T |
|
| Q |
400 |
tatatgttagactagattgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatg |
487 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||| |||||| |||||||||||||||| |
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|
| T |
42124 |
tttatgttagactagattgcacggttcttgatattttcaactttatagttaatatgcttataa--atatttctcagtttcaaataatg |
42209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 25530 - 25595
Alignment:
| Q |
373 |
taatctgaaccattggctactttgatatatatgttagactagattgcacggttcttcatattttcaa |
439 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||||||| || | ||||| |||||||||| |
|
|
| T |
25530 |
taatctgtaccatttgctactttgatatttatgttagactagatt-catgattcttgatattttcaa |
25595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 703
Target Start/End: Original strand, 25644 - 25689
Alignment:
| Q |
658 |
gagaataattaagacgaagaatttaaaagatatgcattaatatttt |
703 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| ||||||| |
|
|
| T |
25644 |
gagaataattaagccgaagaatttaatagatatgcatttatatttt |
25689 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 25262 - 25321
Alignment:
| Q |
61 |
aaacactttgtcctgatattacttgagaaattcttgttttgtattattactcactagaat |
120 |
Q |
| |
|
||||| |||||||||||||| || ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
25262 |
aaacattttgtcctgatattcgttaggaaattcatgttttgtattgttactcactagaat |
25321 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 56 - 280
Target Start/End: Original strand, 28240905 - 28241129
Alignment:
| Q |
56 |
cattgaaacactttgtcctgatattacttgagaaattcttgttttgtattattactcactagaattactatttgaatttgaataatttaatcattcaatc |
155 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28240905 |
cattgaaacattttgtcctgatattacttgagaaattcctgctttgtattattactcactggaattactatttgaatttgaataatttaatcattcaatc |
28241004 |
T |
|
| Q |
156 |
tgtttttattgttgttaagtttaatctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttg |
255 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28241005 |
tgtgtttattgttgtaaagtttaatctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttg |
28241104 |
T |
|
| Q |
256 |
caaagagcattgaattcaactttgg |
280 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
28241105 |
caaagagcattgaattcaacattgg |
28241129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 344 - 541
Target Start/End: Original strand, 28180210 - 28180407
Alignment:
| Q |
344 |
atatttcaagaagattttacattatagtctaat----ctgaaccattggctactttgatatatatgttagactagattgcacggttcttcatattttcaa |
439 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28180210 |
atatttcgagtagattttacattatagtctaattaatctgaaccattggctactttgatatttatgttagactagattgcacggttcttgatattttcaa |
28180309 |
T |
|
| Q |
440 |
ttttatagattatatgcttataaagatatttatcagtttcaaataatgtaaggtcatcaatgattgaaaattgatgataatggtaagagaacatcttacc |
539 |
Q |
| |
|
||||||||||||| | |||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28180310 |
ttttatagattatc--catataaa--tatttctcagtttcaaataatgtaaggtcttcaatgattgaaaattgatgataatgctaagagaacatcttacc |
28180405 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 206 - 334
Target Start/End: Original strand, 28224896 - 28225024
Alignment:
| Q |
206 |
attaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaactttggaggcagttttgcatagattgttgaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
28224896 |
attaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaacattggaggcagtcttgcatagattgttgaa |
28224995 |
T |
|
| Q |
306 |
tattagcaatgatgtgactggtgctggta |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28224996 |
tattagcaatgatgtgactggtgctggta |
28225024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 306 - 487
Target Start/End: Original strand, 28241862 - 28242047
Alignment:
| Q |
306 |
tattagcaatgatgtgactggtgctggtacgttgatatatatttcaagaagattttacattatagtctaat------ctgaaccattggctactttgata |
399 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28241862 |
tattatcaatgatgtgactggttctggtatgttgatatatatttcaagaagattttactttatagtctaataataatctgaaccattggctactttgata |
28241961 |
T |
|
| Q |
400 |
tatatgttagactagattgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatg |
487 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
28241962 |
tttatgttagactagattgcacggttcttgatattttcaactttatagttaatatgcttataa--atatttctcagtttcaaataatg |
28242047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 28180138 - 28180208
Alignment:
| Q |
235 |
gcaaagatggagtaaatgttgcaaagagcattgaattcaactttggaggcagttttgcatagattgttgaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||| |||| |
|
|
| T |
28180138 |
gcaaagatggagtaaatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaa |
28180208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 28156506 - 28156582
Alignment:
| Q |
122 |
actatttgaatttgaataatttaatcattcaatctgtttttattgttgttaagtttaatctgttttagaggcctaat |
198 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
28156506 |
actatgtgaatttaaataattcaatcattcaatctgtctttattgttgtgaagtttcctctgttttagaggcataat |
28156582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 652 - 703
Target Start/End: Original strand, 28149140 - 28149191
Alignment:
| Q |
652 |
aagtaggagaataattaagacgaagaatttaaaagatatgcattaatatttt |
703 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
28149140 |
aagtaggagaataattaagttgaagaatttaaaagatatgcaccaatatttt |
28149191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 28180058 - 28180132
Alignment:
| Q |
124 |
tatttgaatttgaataatttaatcattcaatctgtttttattgttgttaagtttaatctgttttagaggcctaat |
198 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||| ||| ||||||||||| |||||| | ||||| ||||||||||| |
|
|
| T |
28180058 |
tatttgagtttgaataattcaatcattaaatatgtgtttattgttgtgaagtttcctttgtttaagaggcctaat |
28180132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 28225032 - 28225097
Alignment:
| Q |
373 |
taatctgaaccattggctactttgatatatatgttagactagattgcacggttcttcatattttcaa |
439 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||||||| || | ||||| |||||||||| |
|
|
| T |
28225032 |
taatctgtaccatttgctactttgatatttatgttagactagatt-catgattcttgatattttcaa |
28225097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 28148927 - 28148972
Alignment:
| Q |
496 |
tcaatgattgaaaattgatgataatggtaagagaacatcttaccca |
541 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| |||||||| |
|
|
| T |
28148927 |
tcaatgattgaaaattgatgataatgctatgagaacagcttaccca |
28148972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 703
Target Start/End: Original strand, 28225146 - 28225191
Alignment:
| Q |
658 |
gagaataattaagacgaagaatttaaaagatatgcattaatatttt |
703 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| ||||||| |
|
|
| T |
28225146 |
gagaataattaagccgaagaatttaatagatatgcatttatatttt |
28225191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 28224764 - 28224823
Alignment:
| Q |
61 |
aaacactttgtcctgatattacttgagaaattcttgttttgtattattactcactagaat |
120 |
Q |
| |
|
||||| |||||||||||||| || ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
28224764 |
aaacattttgtcctgatattcgttaggaaattcatgttttgtattgttactcactagaat |
28224823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 93; Significance: 7e-45; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 401 - 532
Target Start/End: Complemental strand, 58906 - 58778
Alignment:
| Q |
401 |
atatgttagactagattgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatgtaaggtcatcaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
58906 |
atatgttagactagattgcacggttcttgatattttcaattttatagattatatgcttataa--atatttatcagtttcaaataatgt-acgtcttcaat |
58810 |
T |
|
| Q |
501 |
gattgaaaattgatgataatggtaagagaaca |
532 |
Q |
| |
|
||||||||||||||||||||| || ||||||| |
|
|
| T |
58809 |
gattgaaaattgatgataatgctatgagaaca |
58778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 180 - 302
Target Start/End: Complemental strand, 59045 - 58923
Alignment:
| Q |
180 |
tctgttttagaggcctaatgcggtggattaaggaaagttatggtgctcctagtgggcaaagatggagtaaatgttgcaaagagcattgaattcaactttg |
279 |
Q |
| |
|
||||||| | ||||||||| |||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
59045 |
tctgtttcaaaggcctaatacggtggattaagcaaagttattgtggtcctgctgggcaaagatggagtaaatgttgcaaagagcattgaattcaacattg |
58946 |
T |
|
| Q |
280 |
gaggcagttttgcatagattgtt |
302 |
Q |
| |
|
||| || | |||||| ||||||| |
|
|
| T |
58945 |
gagccactcttgcattgattgtt |
58923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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