View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12140_low_4 (Length: 452)
Name: NF12140_low_4
Description: NF12140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12140_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 36746288 - 36745861
Alignment:
| Q |
18 |
cagttcggttaagcaaatctggttctttgtttctgctttcgannnnnnnctcgatgtcttccatcttctttgcaaaccttttgaaggctactcttgcctt |
117 |
Q |
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| T |
36746288 |
cagttcggttaagcaaatctggttctttgtttctgctttcaatttttttctcgatgtcttccatcttctttgcaaaccttttgaaggctactcttgcctt |
36746189 |
T |
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| Q |
118 |
ttcatctgctgtccattcatcattctctcttttccctaagtaaacttcatcagaagcatgccttgacaatatctctatcaccgtaaggtcgatgagagcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36746188 |
ttcatctgctgtccattcatcattctctcttttccctaagtaaacttcatcagaagcatgccttgacaatatctctatcaccgtaaggtcaatgagagcc |
36746089 |
T |
|
| Q |
218 |
tcggtctttggtgtgattgttctcaaataagccctttggtcatctttctccatctcttcatattctttggttcccttttcaggaattaacctccttgtca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746088 |
tcggtctttggtgtgattgttctcaaataagccctttggtcatctttctccatctcttcatattctttggttcccttttcaggaattaacctccttgtca |
36745989 |
T |
|
| Q |
318 |
tagttggtcggttcaagattaaaccaccgtaaggatattgtccgaaattgacagctgcgtggaaagcggatgcaagccatatgattattgagcaggattc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745988 |
tagttggtcggttcaagattaaaccaccgtaaggatattgtccgaaattgacagctgcgtggaaagcggatgcaagccatatgattattgagcaggattc |
36745889 |
T |
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| Q |
418 |
caccaactcgttaatcgaattcatctca |
445 |
Q |
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| T |
36745888 |
caccaactcgttaatcgaattcatctca |
36745861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 380
Target Start/End: Complemental strand, 42689873 - 42689650
Alignment:
| Q |
157 |
gtaaacttcatcagaagcatgccttgacaatatctctatcaccgtaaggtcgatgagagcctcggtctttggtgtgattgttctcaaataagccctttgg |
256 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||| | |||||| || |||| || ||| || |||||||||||||| |||||| |||| |
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| T |
42689873 |
gtaaacttcatcagaagcatgtcttgacaatatttctatcactgaaaggtcaataagagtctgaaacttcggcgtgattgttctcaagtaagccttttga |
42689774 |
T |
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| Q |
257 |
tcatctttctccatctcttcatattctttggttcccttttcaggaattaacctccttgtcatagttggtcggttcaagattaaaccaccgtaaggatatt |
356 |
Q |
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| ||| |||| || ||||||| | ||||| | ||||||| ||| || || | |||||||| ||||| | || ||||| ||||||||||||| |
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| T |
42689773 |
ggactcttcaccatttcatcatattgtgcagttccttcctcaggaagtaatcttctactgatagttgggcggtttagaataaaaccgccgtaaggatatt |
42689674 |
T |
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| Q |
357 |
gtccgaaattgacagctgcgtgga |
380 |
Q |
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|||| ||||| ||||||||||||| |
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| T |
42689673 |
gtccaaaattaacagctgcgtgga |
42689650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 42691979 - 42692028
Alignment:
| Q |
161 |
acttcatcagaagcatgccttgacaatatctctatcaccgtaaggtcgat |
210 |
Q |
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|||||||||||||| |||||||||||||| ||||| || | ||||||||| |
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| T |
42691979 |
acttcatcagaagcgtgccttgacaatatttctataacggaaaggtcgat |
42692028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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