View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12140_low_6 (Length: 413)
Name: NF12140_low_6
Description: NF12140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12140_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 2139450 - 2139054
Alignment:
| Q |
1 |
ttgtgcctcttaatatagtgtctgccaaacttgtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctattagaattggacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2139450 |
ttgtgcctcttaatatagtgtctgccaaacttgtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctattagaattggacc |
2139351 |
T |
|
| Q |
101 |
atacgttagatccatgatagaactcatgcaatgtcctttgacaaaagctcctaacaatggttatatttcaatcaaggtatggcttagttaaagaggttgt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2139350 |
atacattagatccatgatagaactcatgcaatgtcctttgacaaaagctcctaacaatggttatatttcaatcaaggtatggcttagttaaagaggttgt |
2139251 |
T |
|
| Q |
201 |
gaccctctagttcaatttggttttaatgtattcaatgttgatttaacacattttgcctttatatattttcgagttattaggattatgcaataagtacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2139250 |
gaccctctagttcaatttggttttaatgtattcaatgttgatttaacacattttgcctttatatattttcgagttattaggattatgcaataagtacatt |
2139151 |
T |
|
| Q |
301 |
attttcttctatgatttttcaattttataccggattcctttaacataagtaaccannnnnnngttacatgtcaatgaatccatgtagagagataagt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
2139150 |
attttcttctatgatttttcaattttataccggattcctttaacataagtaaccatttttttgttatatgtcaatgaatccatgtagagagataagt |
2139054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 2144750 - 2144664
Alignment:
| Q |
40 |
tagtttctcataagagtatgtgttgcccttaatctatatactat--gctattagaattggaccatacgttagatccatgatagaact |
124 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2144750 |
tagtttctcacgagagtatgtgtagccacaaatctatatactatatgctattagaattggaccatacattagatccatgttagaact |
2144664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 2123363 - 2123292
Alignment:
| Q |
18 |
gtgtctgccaaacttgtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctatt |
89 |
Q |
| |
|
|||||| | ||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||| ||||||||| |
|
|
| T |
2123363 |
gtgtctactaaactagtatatctagtttctcataagagaatgtgatgccactaatctatatattatgctatt |
2123292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 2144586 - 2144548
Alignment:
| Q |
185 |
tagttaaagaggttgtgaccctctagttcaatttggttt |
223 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
2144586 |
tagttaaagaggttgtgatcatctagttcaatttggttt |
2144548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University