View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12141_high_5 (Length: 239)
Name: NF12141_high_5
Description: NF12141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12141_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 24898624 - 24898825
Alignment:
| Q |
19 |
gatacactataaataacaacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagctaaaacatttcaaagtccaa |
118 |
Q |
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| T |
24898624 |
gatacactataaataacaacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagcaaaagcatttcaacgtccaa |
24898723 |
T |
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| Q |
119 |
ataatttttctgcttcttcaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaaggatccag |
218 |
Q |
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| T |
24898724 |
acaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaatgatccag |
24898823 |
T |
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| Q |
219 |
tt |
220 |
Q |
| |
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|| |
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| T |
24898824 |
tt |
24898825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 24891344 - 24891142
Alignment:
| Q |
15 |
cacagatacactataaataacaacaataccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagctaaaacatttcaaagt |
114 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
24891344 |
cacagatacactataaataacaa---taccaccacccttctctcatattcattcattctttttctcaactctccaccaaaaagcaataacatttcaaagt |
24891248 |
T |
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| Q |
115 |
ccaaataatttttctgcttcttcaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaaggat |
214 |
Q |
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| T |
24891247 |
ccaaacaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacaccattttttctatgccctatttcactacaactcatgaaagat |
24891148 |
T |
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| Q |
215 |
ccagtt |
220 |
Q |
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|||||| |
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| T |
24891147 |
ccagtt |
24891142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 24906139 - 24906284
Alignment:
| Q |
75 |
tttctcaactctccaccaaaaagctaaaacatttcaaagtccaaataatttttctgcttcttcaatcatacacaatgaatcaagatattgaagttacacc |
174 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24906139 |
tttctcaactctccaccaaaaagcaataacatttcaaagtccaaacaatttttcagctacttgaatcatacacaatgaatcaagatattgaagttacacc |
24906238 |
T |
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| Q |
175 |
attttttctatgccctatttcactacaactcatgaaggatccagtt |
220 |
Q |
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| T |
24906239 |
attttttctatgccctatttcactacaactcatgaaggatccagtt |
24906284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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