View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12141_high_6 (Length: 215)
Name: NF12141_high_6
Description: NF12141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12141_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 35975605 - 35975786
Alignment:
| Q |
19 |
atcctttctttgaaccttttgaaggtgctttagcttcggtataccatcatctttaccagcatataattgtgcattgtatttcttccacttcgttagactc |
118 |
Q |
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| T |
35975605 |
atcctttctttgaaccttttgaaggtgctttagcttcggtataccatcatctttaccagcatataattgcgcattgtatttcttccacttcgttagactc |
35975704 |
T |
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| Q |
119 |
tcagccactcatttagtcctttttcttctactccaagttttattttgatgcagatttcgcacattttgcatagtttattgatct |
202 |
Q |
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| T |
35975705 |
tc-gccacacatttagtcctttttcttctactccaagttttattttgatgcagatttcgcacattttgcatag-ttattgatct |
35975786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 35970947 - 35970862
Alignment:
| Q |
90 |
cattgtatttcttccacttcgttagactctcagccactcatttagtcctttttcttctactccaagttttattttgatgcagattt |
175 |
Q |
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| T |
35970947 |
cattgtattccttccactttgctagaatctcagccacagatttagtccctttttttctagtccaagttttattttgatgcacattt |
35970862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 35978634 - 35978773
Alignment:
| Q |
21 |
cctttctttgaaccttttgaaggtgcttta-gcttcggtataccatcatctttaccagcatataattgtgcattgtatttcttccacttcgttagactct |
119 |
Q |
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||||||||||||||||| | ||||||||| |||| ||| |||||||||||||||||||||| | | ||||||||| |||||| || | |||| ||| |
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| T |
35978634 |
cctttctttgaacctttagccggtgctttacgctttggtttaccatcatctttaccagcataaagcttctcattgtattccttccattttgctagagtct |
35978733 |
T |
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| Q |
120 |
cagccactcatttagtcctttttcttctactccaagtttt |
159 |
Q |
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| T |
35978734 |
cagccacagatttagttccttttcctctactcctagtttt |
35978773 |
T |
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