View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12141_low_2 (Length: 464)
Name: NF12141_low_2
Description: NF12141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12141_low_2 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 226 - 453
Target Start/End: Original strand, 10642749 - 10642976
Alignment:
| Q |
226 |
ctaagttagtttgatccttttaaatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacgtgtgtcttgtgcttgtttgtatc |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10642749 |
ctaagttagtttgatccttttaaatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacgtgtgtcttgtgcttgtgtgtatc |
10642848 |
T |
|
| Q |
326 |
cttcttagttgtgtgattgcttttatgtactatttttatattttaagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaa |
425 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10642849 |
cttcttagttgtgtgattgcttttatgtacgatttttgtattataagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaa |
10642948 |
T |
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| Q |
426 |
ccgtgtatccttctctgtttgggtctgt |
453 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
10642949 |
ccgtgtatccttctctgtttgggtctgt |
10642976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 226 - 453
Target Start/End: Complemental strand, 32713089 - 32712862
Alignment:
| Q |
226 |
ctaagttagtttgatccttttaaatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacgtgtgtcttgtgcttgtttgtatc |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
32713089 |
ctaagttagtttgatccttttaaatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggctacgtgtgtcttgtgcttgtgtgtatc |
32712990 |
T |
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| Q |
326 |
cttcttagttgtgtgattgcttttatgtactatttttatattttaagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaa |
425 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32712989 |
cttcttagttgtgtgattgcttttatgtactatttttgtattataagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaa |
32712890 |
T |
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| Q |
426 |
ccgtgtatccttctctgtttgggtctgt |
453 |
Q |
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| |||| ||||||||||||||||||||| |
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| T |
32712889 |
ctgtgtctccttctctgtttgggtctgt |
32712862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 10642542 - 10642707
Alignment:
| Q |
18 |
ttgttaacacaagcattgccacttttataatgattcacattaaattgtacatgttttacgctacgttgccacgtttattgaactggatggagagtgatgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10642542 |
ttgttaacacaagcattgccacttttataatgattcacattaaattgtacatgttttacgctacgttgccacgtttattgaactggatggagagtgatgg |
10642641 |
T |
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| Q |
118 |
attttatacttattatgaaggnnnnnnnnntcttgaggtttaagtctttgattcgtttagtttatgg |
184 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10642642 |
attttatacttattatgaagg-aaaaaaaatcttgaggtttaagtctttgattcgtttagtttatgg |
10642707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 32713287 - 32713131
Alignment:
| Q |
18 |
ttgttaacacaagcattgccacttttataatgattcacattaaattgtacatgttttacgctacgttgccacgtttattgaactggatggagagtgatgg |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32713287 |
ttgttaatacaagcattgccacttttataatgattcacattaaatt---------ttacgctacgttgccatgtttattgaactggatggagagtgatgg |
32713197 |
T |
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| Q |
118 |
attttatacttattatgaaggnnnnnnnnntcttgaggtttaagtctttgattcgtttagtttatgg |
184 |
Q |
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| T |
32713196 |
attttatacttattatgaagg-aaaaaaaatcttgaggtttaagtctttgattcgtttagtttatgg |
32713131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 226 - 453
Target Start/End: Complemental strand, 23923900 - 23923673
Alignment:
| Q |
226 |
ctaagttagtttgatccttttaaatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacgtgtgtcttgtgcttgtttgtatc |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
23923900 |
ctaagttagtttgatccttttaaatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacgtgtgtcttgtgtttgtgtgtatc |
23923801 |
T |
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| Q |
326 |
cttcttagttgtgtgattgcttttatgtactatttttatattttaagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaa |
425 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23923800 |
cttcttagttgtgtggttgcttttatgtactatttttgtattataagtctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaa |
23923701 |
T |
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| Q |
426 |
ccgtgtatccttctctgtttgggtctgt |
453 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
23923700 |
ccatgtatccttctctgtttgggtctgt |
23923673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 23924107 - 23923942
Alignment:
| Q |
18 |
ttgttaacacaagcattgccacttttataatgattcacattaaattgtacatgttttacgctacgttgccacgtttattgaactggatggagagtgatgg |
117 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23924107 |
ttgttaacacaagcattgccacgtttataacgattcacattaaattgtacatgttttacgctacgttgccacgtttattgaactggatggagagtgatgg |
23924008 |
T |
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| Q |
118 |
attttatacttattatgaaggnnnnnnnnntcttgaggtttaagtctttgattcgtttagtttatgg |
184 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23924007 |
attttatacttaatatgaagg-aaaaaaaatcttgaggtttaagtctttgattcgtttagtttatgg |
23923942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 370 - 453
Target Start/End: Original strand, 3467 - 3550
Alignment:
| Q |
370 |
aagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaaccgtgtatccttctctgtttgggtctgt |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3467 |
aagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaaccgtgtatccttctctgtttgggtctgt |
3550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 43470183 - 43470124
Alignment:
| Q |
62 |
ttgtacatgttttacgctacgttgccacgtttattgaactggatggagagtgatggattt |
121 |
Q |
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|||||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
43470183 |
ttgtacatgttttatgccacgttgccacgtttattgagctggaaggagagtgatggattt |
43470124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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