View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12141_low_3 (Length: 387)
Name: NF12141_low_3
Description: NF12141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12141_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 3743873 - 3744226
Alignment:
| Q |
20 |
attgtgacgaccgagaatgagtggactcggtcgccggagtctgtcaccgtcgaaagagtgagaaactaaacaataagaaaaacgattacccaaatgaggt |
119 |
Q |
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| T |
3743873 |
attgtgacgaccgagaatgagtggactcggtcgccggagtctgtcaccgtcgaaagagtgagaaactaaacaataagaaaaacgattacccaaatgaggt |
3743972 |
T |
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| Q |
120 |
gagagagtagagagctgtgccggaagagataaaattccgcggccaaaaccagctacgccggtgggttcagcgagtgcagtatgagcacaaccaaacgtga |
219 |
Q |
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| T |
3743973 |
gagagagtagagagctgtgccggaagagataaaattccgcggccaaaaccagctacgccggtgggttcagcaagtgcagtatgagcacaaccaaacgtga |
3744072 |
T |
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| Q |
220 |
aattctgaagatgaagagtagagatagacagtgtttgttggtagagattagcgacgaagcttccatcaccataagcgtagtaaaaaggtggacaagaaaa |
319 |
Q |
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| T |
3744073 |
agttttgaagatgaagagaagagagagaaagtgtttgttgatacagattagctacgaagcttccatcaccataagcatagtaaaaaggtggacaagaaaa |
3744172 |
T |
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| Q |
320 |
agaagaacaatcagaagtttcgatgaaatctaaaggacaacgtgaaatagcaca |
373 |
Q |
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| T |
3744173 |
agaagaacaatcagaagtttcgatgtaatctaaaggacaacgtgaaatagcaca |
3744226 |
T |
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