View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12141_low_4 (Length: 330)
Name: NF12141_low_4
Description: NF12141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12141_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 22633669 - 22633972
Alignment:
| Q |
20 |
gagacgtgtaaggataattggatgggtaaaagaattcccacagtgacatttatgtttatctttataggttgagttggtaatattacgatataagcagcca |
119 |
Q |
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| T |
22633669 |
gagacgtgtaaggataattggatgggtaaaagaattcccacagtgacatttatgtttatctttatacgttgagttggtaatattacgatataagcagcca |
22633768 |
T |
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| Q |
120 |
atcaagtaggcggcacatgtgaagtactttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgta |
219 |
Q |
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| T |
22633769 |
atagagtaggtggcacatgtgaagtactttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgta |
22633868 |
T |
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| Q |
220 |
gaagcatttgtttgattgtatcgttagagaaacaaccttcatccagatctgccacacttttatacagtgagtttagacaaccgactgtaacttgccctat |
319 |
Q |
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| T |
22633869 |
gaagcatttgtttgattgtctcgttagagacacaaccttcatccagatctgccacacttttatacagcgagtttagacaaccgactgtaacttgccctat |
22633968 |
T |
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| Q |
320 |
gcta |
323 |
Q |
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|||| |
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| T |
22633969 |
gcta |
22633972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 134 - 323
Target Start/End: Complemental strand, 22625351 - 22625162
Alignment:
| Q |
134 |
acatgtgaagtactttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttg |
233 |
Q |
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| T |
22625351 |
acatgcgaagtactttgttggttgagtgtcatcaatgttgagtttaagagtgttgcaataatcttcagctgagtttattggctgcagcaacatttgtttg |
22625252 |
T |
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| Q |
234 |
attgtatcgttagagaaacaaccttcatccagatctgccacacttttatacagtgagtttagacaaccgactgtaacttgccctatgcta |
323 |
Q |
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| T |
22625251 |
gttgtcttagttgagaaacaaccttcatccagatttgcaacacttccatagagagagtttagacaaccaactgtaacttgccctatgcta |
22625162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 23365876 - 23365710
Alignment:
| Q |
157 |
gagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttgattgtatcgttagagaaacaacc |
256 |
Q |
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| T |
23365876 |
gagtgtcttcgatgttaagttcaagagtgttgcaataatcttctgcaaagttagttggtttaagcagcatttgtttgattgtatgactactcatacaatc |
23365777 |
T |
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| Q |
257 |
ttcatccagatctgccacacttttatacagtgagtttagacaaccgactgtaacttgccctatgcta |
323 |
Q |
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| T |
23365776 |
ttcatcaagatcaaccacacttcgatagagtgagtttagacaaccaacggtaactggccctatgcta |
23365710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 22623064 - 22622971
Alignment:
| Q |
145 |
actttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattggttgtagaagcatttgtttgattgt |
238 |
Q |
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| T |
22623064 |
actttgttggttgagtgtcatcgatgttaagtttaagagtgttgcaataatcttctgcgaagttaataggttgcagcaacatttgtttggttgt |
22622971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 23335955 - 23336035
Alignment:
| Q |
134 |
acatgtgaagtactttgttggttgagtgtcgtcaatgttgattttaagagtgttacaataatcttccgctgagttgattgg |
214 |
Q |
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|||| |||||||||||||||| | | |||||||||||| | ||||||||| |||||||| |||| ||| ||||| |||| |
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| T |
23335955 |
acatatgaagtactttgttggatttgagtcgtcaatgttaagtttaagagttctacaataaccttctgctaagttggttgg |
23336035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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