View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12141_low_5 (Length: 301)
Name: NF12141_low_5
Description: NF12141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12141_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 37188173 - 37188448
Alignment:
| Q |
18 |
ctcactatatatataaaaatccattagctttctatggcattttcaagagttacattcctagtcattttaatctctacggttgcaattgcctcagctggca |
117 |
Q |
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| T |
37188173 |
ctcactatatatataaaaatccattagctttctatggcattttcaagagttacattcctagtcattttaatctctacggttgcaattgcctctgctggca |
37188272 |
T |
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| Q |
118 |
atttttatcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188273 |
atttttatcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctc |
37188372 |
T |
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| Q |
218 |
tggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcatctctgct |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37188373 |
tggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcaactctgct |
37188448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 69 - 293
Target Start/End: Original strand, 53492262 - 53492486
Alignment:
| Q |
69 |
acattcctagtcattttaatctctacggttgcaattgcctcagctggcaatttttatcaagactttgatataacatggggggatggacgtgctaaaatac |
168 |
Q |
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| T |
53492262 |
acattcctggtcatttttatttctacggttgcaattgcctctgctggcaatttttatcaagactttgatataacatggggggatggtcgtgctaaaatac |
53492361 |
T |
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| Q |
169 |
tcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagct |
268 |
Q |
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| T |
53492362 |
tcaacagtggccaacttcttactctatctcttgataagtcctctggttcaggctttcaatccaaaaatgaatacctttttggcaaaattgatatgcaact |
53492461 |
T |
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| Q |
269 |
taaacttgttcctggcatctctgct |
293 |
Q |
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| T |
53492462 |
taaacttgttcctggcaactctgct |
53492486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 53494630 - 53494813
Alignment:
| Q |
109 |
cagctggcaatttttatcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatc |
208 |
Q |
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| T |
53494630 |
cagctggaaacttttaccagaactttgatataacatggggagatggtcgtgccaagatactcgacaacggacaacttctcactttatcccttgacaaagc |
53494729 |
T |
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| Q |
209 |
ctctggctctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcatctctgc |
292 |
Q |
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| T |
53494730 |
ctctggttctggatttcaatccaagaatgaatatctctttggcaacattgatatgcagctcaagcttgtacctggaaactctgc |
53494813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 141 - 293
Target Start/End: Original strand, 53498648 - 53498800
Alignment:
| Q |
141 |
acatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttcaatccaaaaatgaat |
240 |
Q |
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|||||||| ||||| ||||| |||||||||||||| | | | ||||||||| | |||||||||||| ||||||| || || ||||||||||||||||||| |
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| T |
53498648 |
acatggggagatggtcgtgccaaaatactcaacaacgccaatcttcttactctatctcttgacaaagcctctggttcaggctttcaatccaaaaatgaat |
53498747 |
T |
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| Q |
241 |
acctttttggcaaaattgatatgcagcttaaacttgttcctggcatctctgct |
293 |
Q |
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|| | ||||||||||||||||||||| |||| |||||||| || | ||||||| |
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| T |
53498748 |
acttatttggcaaaattgatatgcagattaagcttgttccaggaaactctgct |
53498800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 52590372 - 52590520
Alignment:
| Q |
117 |
aatttttatcaagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggct |
216 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| ||||| |||| ||||| |||||||| || |||||||||||||||||| | |||||| | ||||||| |
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| T |
52590372 |
aattttaatcaatactttgatataacatggggtgatggtcgtggcaaaatcctcaacaacggacaacttcttactttgtctttggacaaagcatctggct |
52590471 |
T |
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| Q |
217 |
ctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgca |
265 |
Q |
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|||| |||| ||||||||||| ||| | ||||| |||||||| ||||| |
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| T |
52590472 |
ctggatttcgttccaaaaatgagtacttgtttggaaaaattgacatgca |
52590520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 283
Target Start/End: Complemental strand, 53489697 - 53489585
Alignment:
| Q |
171 |
aacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttcaatccaaaaatgaatacctttttggcaaaattgatatgcagctta |
270 |
Q |
| |
|
|||||||| || ||||||||| ||||||| || | | ||||||||||||| ||||||||||| ||| |||| |||| ||| || ||||| ||||| ||| |
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| T |
53489697 |
aacaatggtcagcttcttactctgtctctagatagaacctctggctctggctttcaatccaataatcaatatctttatggaaagattgacatgcaaatta |
53489598 |
T |
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| Q |
271 |
aacttgttcctgg |
283 |
Q |
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||||||||||||| |
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| T |
53489597 |
aacttgttcctgg |
53489585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 293
Target Start/End: Original strand, 35016252 - 35016419
Alignment:
| Q |
126 |
caagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttc |
225 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||| ||| |||| ||| |||||||| | | || ||||||||| |||||||||||| || |
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| T |
35016252 |
caagactttgatctaacatggggtgataaccgtgctaagatattcaatggtggtcaacttctatcactttcccttgacaaagtctctggctctggcttca |
35016351 |
T |
|
| Q |
226 |
aatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctggcatctctgct |
293 |
Q |
| |
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|||| || | || ||||| ||||| | |||||||||||||||||| |||||| |||||| ||||||| |
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| T |
35016352 |
aatcaaagagagagtacctatttgggagaattgatatgcagcttaagcttgttgctggcaactctgct |
35016419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 283
Target Start/End: Complemental strand, 38214883 - 38214726
Alignment:
| Q |
126 |
caagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttc |
225 |
Q |
| |
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|||||||||||| |||| ||||| || |||||||| ||| |||| ||| |||||||| || | |||||||| ||| | ||||||||||| || | |
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| T |
38214883 |
caagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttcc |
38214784 |
T |
|
| Q |
226 |
aatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctgg |
283 |
Q |
| |
|
||||||| || || || | ||||| | |||||||||||| |||||||||||| |||| |
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|
| T |
38214783 |
aatccaagaaagagtatttatttggtagaattgatatgcaacttaaacttgttgctgg |
38214726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 283
Target Start/End: Complemental strand, 38219104 - 38218947
Alignment:
| Q |
126 |
caagactttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttc |
225 |
Q |
| |
|
|||||||||||| |||| ||||| || |||||||| ||| |||| ||| |||||||| || | |||||||| ||| | ||||||||||| || | |
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| T |
38219104 |
caagactttgatctaacttggggtgaccaccgtgctaagatattcaatggtggtcaacttctatctctttctcttgataaaacttctggctctggcttcc |
38219005 |
T |
|
| Q |
226 |
aatccaaaaatgaatacctttttggcaaaattgatatgcagcttaaacttgttcctgg |
283 |
Q |
| |
|
||||||| || || || | ||||| | |||||||||||| |||||||||||| |||| |
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|
| T |
38219004 |
aatccaagaaagagtatttatttggtagaattgatatgcaacttaaacttgttgctgg |
38218947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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