View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12142_high_11 (Length: 334)
Name: NF12142_high_11
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12142_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 100 - 318
Target Start/End: Complemental strand, 36186073 - 36185855
Alignment:
| Q |
100 |
accatcgaaaccttatgttttcgggaggcgaaacttggtctcttcgtcgacttatttgtagcataaagcattcgattgaggtaataacaaacaacttttc |
199 |
Q |
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| T |
36186073 |
accatcaaaaccttatgtgttcgagaggcgaaacttggtctcttcgtcgacttatttgtagcataaagcattcgattgaggtaataacaaacaacttttc |
36185974 |
T |
|
| Q |
200 |
tctcactgctcatgttactactgtcaatcgatatgtcaaatggaacaacaataatatctcttgtgttattctgaatgttgattgtagttgtcatggtact |
299 |
Q |
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| T |
36185973 |
tcccactgctcatgttactactgtcaatcgatatgtcaaatggaacaacaataatctctcttgtgttattctgaatgttgattgtatttgtcatggtact |
36185874 |
T |
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| Q |
300 |
cctcttataacaaggtttg |
318 |
Q |
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| T |
36185873 |
cctcttataacagggtttg |
36185855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 36186103 - 36186072
Alignment:
| Q |
1 |
atgagttcttctctcccaatgacgtgtatgac |
32 |
Q |
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| T |
36186103 |
atgagttcttctctcccaatgacgtgtatgac |
36186072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 150 - 311
Target Start/End: Original strand, 21377333 - 21377494
Alignment:
| Q |
150 |
cttatttgtagcataaagcattcgattgaggtaataacaaacaacttttctctcactgctcatgttactactgtcaatcgatatgtcaaatggaacaaca |
249 |
Q |
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| T |
21377333 |
cttatttgtagcataaagcattcaattgaggtaataacaaacaactttactcccactgctcttgttactccagttaaccgatatgtcaaatggaacaaca |
21377432 |
T |
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| Q |
250 |
ataatatctcttgtgttattctgaatgttgattgtagttgtcatggtactcctcttataaca |
311 |
Q |
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| T |
21377433 |
ataatctctcttatgttattttgaatgttgacggtagctgccatggtactcctctcataaca |
21377494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 21377186 - 21377282
Alignment:
| Q |
2 |
tgagttcttctctcccaatgacgtgtatgactggcttatagagagtgttaggagttctcaggcaaccactttttcaactggagattggtggtcttgg |
98 |
Q |
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| T |
21377186 |
tgagtttttctctcccaatgatgcacatgactcgcttaaagagggtgctaggggttctcaagcaaccacagttttagctagagtttggtggtcttgg |
21377282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 5204486 - 5204427
Alignment:
| Q |
81 |
ggagattggtggtcttggcaccatcgaaaccttatgttttcgggaggcgaaacttggtct |
140 |
Q |
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| T |
5204486 |
ggagtttggtggtcttggcgacatcgaaaccttatgtgtttgggtggtgaaacttggtct |
5204427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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