View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12142_high_20 (Length: 245)
Name: NF12142_high_20
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12142_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2176406 - 2176170
Alignment:
| Q |
1 |
tttgaaactatcaattttgttttacttctaagaacaatttattcgagtcaatcagttaattattgattttcttgacattggaactgggcaatggaattgg |
100 |
Q |
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| T |
2176406 |
tttgaaactatcaattttgttttacttctaagaacaatttattcgagtcaatcagttaattattgattttcttgacattggaactgggcaatggaattgg |
2176307 |
T |
|
| Q |
101 |
ccaactttctatttatgatgatctgaatgatttggtttgacaaaagcatgttattttttagggaaggcttcccttcttgagcgttttatacatagataat |
200 |
Q |
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| T |
2176306 |
ccaactttctatttatgatgatctgaatgatttggtttgacaaaagcctgttattttttagggaaggcttcccttcttgagcgttttatacatagataat |
2176207 |
T |
|
| Q |
201 |
tttcagttatgtggtagaaagtttttatcacaggttc |
237 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
2176206 |
tttcagttatgtggtagaaagtttttatcagaggttc |
2176170 |
T |
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