View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12142_high_22 (Length: 241)
Name: NF12142_high_22
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12142_high_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 4401590 - 4401814
Alignment:
| Q |
17 |
cagaatgcacaacatatataggaccaatttaccataaattgtcgtaatgaaaaatcgacagtctttaggtagcccttcctaacccttccatatgctatat |
116 |
Q |
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| T |
4401590 |
cagaatgcacaacatatataggaccaatttaccataaattgtagtaatgaaaaaccgacagtctttaggtaggccttcctaacccttccatatgctatat |
4401689 |
T |
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| Q |
117 |
ttcgtcatgtaataataaaataaaataacaattatgccatatttatttatacaaataaatgtgatcacattattcaaagtgcagctcagaagtgttaatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4401690 |
ttcgtcatgtaataataaaataaaataacaattatgccatatttatttatacaaataaatgagatcacattattcaaagtgcagctcagaagtgttaatt |
4401789 |
T |
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| Q |
217 |
agaaaccaaaacaataacattttac |
241 |
Q |
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| T |
4401790 |
aaaaaccaaaacaataacattttac |
4401814 |
T |
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