View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12142_high_25 (Length: 239)

Name: NF12142_high_25
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12142_high_25
NF12142_high_25
[»] chr2 (10 HSPs)
chr2 (1-60)||(16651470-16651529)
chr2 (60-105)||(18979645-18979690)
chr2 (59-105)||(21606100-21606146)
chr2 (60-105)||(11358980-11359025)
chr2 (60-105)||(36983303-36983348)
chr2 (60-104)||(42553119-42553163)
chr2 (59-105)||(20938925-20938971)
chr2 (59-105)||(35586743-35586788)
chr2 (60-105)||(24480368-24480412)
chr2 (60-93)||(23887116-23887149)
[»] chr8 (4 HSPs)
chr8 (60-105)||(35033819-35033864)
chr8 (60-105)||(1051989-1052034)
chr8 (60-93)||(28982093-28982126)
chr8 (60-93)||(28987313-28987346)
[»] chr6 (10 HSPs)
chr6 (60-105)||(18360675-18360720)
chr6 (60-105)||(6928841-6928886)
chr6 (59-105)||(15299239-15299285)
chr6 (60-105)||(6955422-6955467)
chr6 (60-105)||(17311020-17311065)
chr6 (60-105)||(25465223-25465268)
chr6 (60-105)||(25314392-25314437)
chr6 (60-105)||(26201886-26201931)
chr6 (59-105)||(15330867-15330913)
chr6 (60-105)||(17703531-17703576)
[»] chr4 (11 HSPs)
chr4 (60-105)||(3096380-3096425)
chr4 (60-105)||(29454106-29454151)
chr4 (60-105)||(29447422-29447467)
chr4 (60-105)||(51930923-51930968)
chr4 (58-105)||(6457486-6457533)
chr4 (58-105)||(38637352-38637399)
chr4 (58-105)||(49239589-49239636)
chr4 (60-105)||(3265363-3265408)
chr4 (60-105)||(26396991-26397036)
chr4 (60-105)||(49748305-49748350)
chr4 (60-105)||(11938466-11938511)
[»] chr3 (10 HSPs)
chr3 (60-105)||(10383269-10383314)
chr3 (60-105)||(10424060-10424105)
chr3 (59-105)||(14843921-14843967)
chr3 (60-105)||(3109805-3109850)
chr3 (60-105)||(23825584-23825629)
chr3 (59-105)||(43722847-43722893)
chr3 (60-105)||(14951655-14951700)
chr3 (60-105)||(16413059-16413104)
chr3 (58-105)||(50654769-50654815)
chr3 (60-105)||(29494882-29494927)
[»] scaffold1026 (1 HSPs)
scaffold1026 (60-105)||(595-640)
[»] scaffold0136 (1 HSPs)
scaffold0136 (60-105)||(398-443)
[»] scaffold0126 (1 HSPs)
scaffold0126 (60-105)||(29004-29049)
[»] chr7 (9 HSPs)
chr7 (60-105)||(8195981-8196026)
chr7 (60-105)||(8212684-8212729)
chr7 (59-105)||(751187-751233)
chr7 (59-101)||(12398619-12398661)
chr7 (60-105)||(12756979-12757024)
chr7 (60-105)||(48986703-48986748)
chr7 (60-105)||(40683544-40683589)
chr7 (60-105)||(40921679-40921723)
chr7 (59-105)||(5186014-5186059)
[»] chr5 (3 HSPs)
chr5 (60-105)||(1110444-1110489)
chr5 (60-105)||(22246995-22247040)
chr5 (60-105)||(38015002-38015046)
[»] scaffold0072 (1 HSPs)
scaffold0072 (60-105)||(62796-62841)
[»] chr1 (6 HSPs)
chr1 (60-105)||(31534026-31534071)
chr1 (60-105)||(31550819-31550864)
chr1 (60-105)||(52400187-52400232)
chr1 (60-105)||(26722471-26722516)
chr1 (60-105)||(37676752-37676797)
chr1 (60-105)||(37683423-37683468)
[»] scaffold0430 (1 HSPs)
scaffold0430 (60-105)||(14780-14825)
[»] scaffold0276 (1 HSPs)
scaffold0276 (60-105)||(20849-20894)
[»] scaffold0041 (1 HSPs)
scaffold0041 (60-105)||(51372-51416)
[»] scaffold0137 (1 HSPs)
scaffold0137 (60-105)||(25115-25160)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16651529 - 16651470
Alignment:
Q  1 tgatctacaagtgcggttatggaaaggttgataggcagagaattgctttgactgacaact 60  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16651529 tgatctacaagcgcggttatggaaaggttgataggcagagaattgctttgactgacaact 16651470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 18979690 - 18979645
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  18979690 tgtaacgccctagttatttatttaattaattttaaactatgtggag 18979645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 21606146 - 21606100
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  21606146 ctgtaacgccctagttatttatttaattaattttaaagtatgtggag 21606100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 11358980 - 11359025
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  11358980 tgtaacgccctagttatttatttaattaatttgaaactatgtggag 11359025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 36983303 - 36983348
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||    
T  36983303 tgtaacgccctagttatttatttaattaattttaatctatgtggag 36983348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 42553163 - 42553119
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtgga 104  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||    
T  42553163 tgtaacgccctagttatttatttaattaattttatactatgtgga 42553119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 20938971 - 20938925
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||    
T  20938971 ctgtaacgccctagttatttatttaattaatttaaaattatgtggag 20938925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 35586788 - 35586743
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  35586788 ctgtaacgccctagttatttatttaatt-attttaaactatgtggag 35586743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 24480368 - 24480412
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  24480368 tgtaacgccctagttatttatttaatt-attttaaactatgtggag 24480412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 23887116 - 23887149
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaatttta 93  Q
    |||||||||||||| |||||||||||||||||||    
T  23887116 tgtaacgccctagttatttatttaattaatttta 23887149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 35033864 - 35033819
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35033864 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 35033819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 1052034 - 1051989
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  1052034 tgtaacgccctagttatttatttaattaattttaaactatgtggag 1051989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 28982126 - 28982093
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaatttta 93  Q
    |||||||||||||| |||||||||||||||||||    
T  28982126 tgtaacgccctagttatttatttaattaatttta 28982093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 28987346 - 28987313
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaatttta 93  Q
    |||||||||||||| |||||||||||||||||||    
T  28987346 tgtaacgccctagttatttatttaattaatttta 28987313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 18360720 - 18360675
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18360720 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 18360675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 6928841 - 6928886
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  6928841 tgtaacgccctagttatttatttaattaattttaaactatgtggag 6928886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 15299285 - 15299239
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||    
T  15299285 ctgtaacgccctaattatttatttaattaattttaaactatgtggag 15299239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 6955467 - 6955422
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  6955467 tgtaacgccctagttatttatttaattaattttatactatgtggag 6955422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 17311065 - 17311020
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  17311065 tgtaacgccctaattatttatttaattaattttaaactatgtggag 17311020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 25465268 - 25465223
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||    
T  25465268 tgtaacgccctagttatttatttaattaattttaaactatgaggag 25465223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 25314392 - 25314437
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||    
T  25314392 tgtaacgccctagttatttatttaattaatttaaaattatgtggag 25314437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 26201886 - 26201931
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||    
T  26201886 tgtaacgccctagttatttatttaattaatttaaaattatgtggag 26201931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 15330867 - 15330913
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||| | |||||||||||| |||||||||||| |||||    
T  15330867 ctgtaacgccctatttatttatttaatttattttaaactatttggag 15330913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 17703576 - 17703531
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||| |  |||||||||    
T  17703576 tgtaacgccctagttatttatttaattaattttgatttatgtggag 17703531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 3096380 - 3096425
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3096380 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 3096425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 29454106 - 29454151
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29454106 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 29454151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 29447422 - 29447467
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  29447422 tgtaacgtcctagtgatttatttaattaattttaaactatgtggag 29447467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 51930923 - 51930968
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  51930923 tgtaacgccctagttatttatttaattaattttaaactatgtggag 51930968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 6457486 - 6457533
Alignment:
Q  58 actgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  6457486 actgtaacgccctagttatttatttaattaattgtaaactatgtggag 6457533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 38637352 - 38637399
Alignment:
Q  58 actgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||    
T  38637352 actgtaacgccctaattatttatttaattaattttaaactatgtggag 38637399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 49239589 - 49239636
Alignment:
Q  58 actgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  49239589 actgtaacgccctagttatttatttaattaattttatactatgtggag 49239636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 3265363 - 3265408
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  3265363 tgtaacgccctagttatttatttaattaattttatactatgtggag 3265408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 26397036 - 26396991
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  26397036 tgtaacgccctaattatttatttaattaattttaaactatgtggag 26396991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 49748305 - 49748350
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  49748305 tgtaacgccctagttatttatttaattaattttatactatgtggag 49748350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 11938511 - 11938466
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||    
T  11938511 tgtaacgccctagttatttatttaattaatttaaaattatgtggag 11938466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 10383314 - 10383269
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10383314 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 10383269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 10424105 - 10424060
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10424105 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 10424060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 14843921 - 14843967
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  14843921 ctgtaacgccctagttatttatttaattaattttaaactatgtggag 14843967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 3109850 - 3109805
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  3109850 tgtaacgccctagttatttatttaattaattttaaactatgtggag 3109805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 23825584 - 23825629
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  23825584 tgtaacgccctggtgatttatttaattaattttaaactatgtggag 23825629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 43722847 - 43722893
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||    
T  43722847 ctgtaacgccctaattatttatttaattaattttaaactatgtggag 43722893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 14951700 - 14951655
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  14951700 tgtaacgccctagttatttatttaattaatttgaaactatgtggag 14951655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 16413059 - 16413104
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  16413059 tgtaacgccctagttatttatttaattaatttgaaactatgtggag 16413104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 50654769 - 50654815
Alignment:
Q  58 actgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  50654769 actgtaacgccctagttatttatttaatt-attttaaactatgtggag 50654815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 29494927 - 29494882
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||| ||| ||| ||||    
T  29494927 tgtaacgccctagttatttatttaattaatttttaaccatgaggag 29494882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 640 - 595
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  640 tgtaacgccctagttatttatttaattaattttaaactatgtggag 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 443 - 398
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  443 tgtaacgccctagttatttatttaattaattttaaactatgtggag 398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 29004 - 29049
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  29004 tgtaacgctctagtgatttatttaattaattttaaactatgtggag 29049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 8195981 - 8196026
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  8195981 tgtaacgccctagttatttatttaattaattttaaactatgtggag 8196026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 8212684 - 8212729
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  8212684 tgtaacgccctagttatttatttaattaattttaaactatgtggag 8212729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 751233 - 751187
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  751233 ctgtaacgccctagttatttatttaattaattttatactatgtggag 751187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 12398619 - 12398661
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgt 101  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  12398619 ctgtaacgccctagttatttatttaattaattttaaactatgt 12398661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 12756979 - 12757024
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  12756979 tgtaacgccctaattatttatttaattaattttaaactatgtggag 12757024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 48986703 - 48986748
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  48986703 tgtaacgccctagttatttatttaattaattttatactatgtggag 48986748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 40683544 - 40683589
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||    
T  40683544 tgtaacgccctaattatttatttaattaattttatactatgtggag 40683589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 40921679 - 40921723
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  40921679 tgtaacgccctagttatttatttaatt-attttaaactatgtggag 40921723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 5186014 - 5186059
Alignment:
Q  59 ctgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||||    
T  5186014 ctgtaacgccctagttatt-atttaattaattttatactatgtggag 5186059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 1110444 - 1110489
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  1110444 tgtaacgccctagttatttatttaattaattttaaactatgtggag 1110489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 22246995 - 22247040
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||    
T  22246995 tgtaacgccctagttatttatttaattaatttttaactatgtggag 22247040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 38015046 - 38015002
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  38015046 tgtaacgccctagttatttatttaatt-attttaaactatgtggag 38015002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 62796 - 62841
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  62796 tgtaacgccctagttatttatttaattaattttatactatgtggag 62841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 31534026 - 31534071
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  31534026 tgtaacgccctagttatttatttaattaattttatactatgtggag 31534071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 31550819 - 31550864
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  31550819 tgtaacgccctagttatttatttaattaattttatactatgtggag 31550864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 52400232 - 52400187
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  52400232 tgtaacgccctaattatttatttaattaattttaaactatgtggag 52400187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 26722471 - 26722516
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||||    
T  26722471 tgtaacgccctagttatttatttaattaatttgaaactatatggag 26722516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 37676797 - 37676752
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||    
T  37676797 tgtaacgccctagttatttatttaattaatttaaaattatgtggag 37676752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 37683468 - 37683423
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||    
T  37683468 tgtaacgccctagttatttatttaattaatttaaaattatgtggag 37683423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 14780 - 14825
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||    
T  14780 tgtaacgccctagttatttatttaattaatttaaaattatgtggag 14825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 20849 - 20894
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||||    
T  20849 tgtaacgccctagttatttatttaattaattttatactacgtggag 20894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 51416 - 51372
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  51416 tgtaacgccctagttatttatttaatt-attttaaactatgtggag 51372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 25115 - 25160
Alignment:
Q  60 tgtaacgccctagtgatttatttaattaattttaaactatgtggag 105  Q
    |||||||||||||| ||||||||||||||||| ||  |||||||||    
T  25115 tgtaacgccctagttatttatttaattaatttgaatttatgtggag 25160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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