View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12142_high_26 (Length: 227)
Name: NF12142_high_26
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12142_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 41769912 - 41769845
Alignment:
| Q |
141 |
cactttcctttagactaaggttgtgtaaacaaaaagccctaaaataaataaaatatacaattcatcac |
208 |
Q |
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| T |
41769912 |
cactttcctttagactaaggttgtgtaaacaaaaagccctaaaataaataaaatatacaattcatcac |
41769845 |
T |
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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 41770037 - 41769987
Alignment:
| Q |
16 |
tgtgaccttccccatgaatgaaagtaaaggaagaaggaccaccttatcaac |
66 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41770037 |
tgtgaccttccccatgaatgaaagtaaaggaagaaggaccaccttatcaac |
41769987 |
T |
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