View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12142_high_3 (Length: 664)

Name: NF12142_high_3
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12142_high_3
NF12142_high_3
[»] chr2 (1 HSPs)
chr2 (7-645)||(40708510-40709156)


Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 7 - 645
Target Start/End: Original strand, 40708510 - 40709156
Alignment:
Q  7 ggagcagagatggtgggatttttagaagttatgaaggttttaggttctatctgagtttcttggtttggttttccaattttggttgatgttgagtttcaat 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40708510 ggagaagagatggtgggatttttagaagttatgaaggttttaggttctatctgagtttcttggtttggttttccaattttggttgatgttgagtttcaat 40708609  T
Q  107 caattttccatattgggagctaatatgtgatacagtttcaggtaagttttctagcaatttccttagttatagccaatttgatttannnnnnnnagaaaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||    
T  40708610 caattttccatattgggagctaatatgtgatacagtttcaggtaagttttctagcaatttccttagttatagccaatttgattttttttttttagaaaaa 40708709  T
Q  207 atagagatgaagagatttgataatccgcttagtggaataaggcttggtcgtccatattgaagagatttgatgaaaattgctgggaataaagagtttatag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40708710 atagagatgaagagatttgataatccgcttagtggaataaggcttggtcgtccatattgaagagatttgatgaaaattgctgggaataaagagtttatag 40708809  T
Q  307 gataaaagagaacatggaggataaagagtaagggagtgctgagttgtt------------gacaatagaaaaactcagtgagtatcaataatcaaatgtt 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  40708810 gataaaagagaacatggaggataaagagtaagggagtgctgagttgttaagcggaggaaggacaatagaaaaactcagtgagtatcaataatcaaatgtt 40708909  T
Q  395 gctttggttgatgaacatgattattgatcataagcaagcatgtgttgcacaatcaatcaagtgtcctttactcaattggtttaaatgcttaccgttatag 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  40708910 gctttggttgatgaacatgattattgatcataagcaagcatgtgttgcacaat----caagtgtcctttactcaattggtttaaatgcttaccgttatag 40709005  T
Q  495 agtttatctaaccgttgttcttaggctttcatggccattaatatcattgattttctatgaaaatgtggcaacggtaataaagaaattgattaagcattta 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40709006 agtttatctaaccgttgttcttaggctttcatggccattaatatcattgattttctatgaaaatgtggcaacggtaatgaagaaattgattaagcattta 40709105  T
Q  595 gccacttgcaagatatataaaggacgcatggaaactatggcaggggaggaa 645  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40709106 gccacttgcaagatatataaaggacgcatggaaactatggccggggaggaa 40709156  T

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