View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12142_low_11 (Length: 401)

Name: NF12142_low_11
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12142_low_11
NF12142_low_11
[»] chr2 (2 HSPs)
chr2 (49-374)||(42166152-42166478)
chr2 (15-49)||(42166053-42166087)
[»] chr7 (3 HSPs)
chr7 (58-110)||(4514190-4514242)
chr7 (54-119)||(22731500-22731564)
chr7 (48-120)||(39227738-39227810)
[»] chr8 (2 HSPs)
chr8 (76-130)||(34062317-34062371)
chr8 (54-110)||(12843129-12843185)
[»] chr5 (3 HSPs)
chr5 (48-121)||(22186059-22186132)
chr5 (76-133)||(26013789-26013846)
chr5 (47-120)||(11848651-11848724)
[»] chr1 (1 HSPs)
chr1 (77-133)||(17316377-17316433)
[»] chr6 (1 HSPs)
chr6 (76-111)||(33546284-33546319)
[»] scaffold0669 (1 HSPs)
scaffold0669 (77-111)||(4775-4809)
[»] chr4 (6 HSPs)
chr4 (78-111)||(8502414-8502447)
chr4 (46-111)||(20748274-20748339)
chr4 (81-118)||(23692661-23692698)
chr4 (76-112)||(11545276-11545312)
chr4 (76-120)||(17743623-17743667)
chr4 (76-120)||(23866077-23866121)
[»] chr3 (2 HSPs)
chr3 (54-119)||(10686602-10686667)
chr3 (76-120)||(13291682-13291726)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 49 - 374
Target Start/End: Original strand, 42166152 - 42166478
Alignment:
Q  49 gttatattctctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaaatcgtactattacagtttgatagcgaccattggaagaa 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  42166152 gttatattctctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaaatggtactattacagtttgatagcgaccatcggaagaa 42166251  T
Q  149 gaagacaaactgattagagtcaccaagacagctgagtactaggaggagccttccattgttatatttttctttctttaaagctgcctgga----ttcaa-- 242  Q
    |||||||||||||||||||||||| | | | | |  |          | ||||||||||||||||||||||||||||||||||| ||||    || ||      
T  42166252 gaagacaaactgattagagtcacccataaatcagttt----------gtcttccattgttatatttttctttctttaaagctgcatggaaggttttaaag 42166341  T
Q  243 ---------tgaatgttttaatgggggttcggtttagagaagaaatcaattacagtacgtaattgagtaagttggaaaaagttgtgcctataaaaggagg 333  Q
              ||||||||||||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||| ||||||||||||    
T  42166342 aaaattgtcagaatgttttaatgggggttcggtttagagaagaaatcaattaca----gtaattgggtaagttggaaaaagttgtgcttataaaaggagg 42166437  T
Q  334 gaggaagatgagcgctatattgtatcatcttatttatcata 374  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42166438 gaggaagatgagcgctatattgtatcatcttatttatcata 42166478  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 42166053 - 42166087
Alignment:
Q  15 gataaagtaccgttttggtttttgggtcaattgtg 49  Q
    |||||||||||||||||||||||||||||||||||    
T  42166053 gataaagtaccgttttggtttttgggtcaattgtg 42166087  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 4514242 - 4514190
Alignment:
Q  58 tctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaa 110  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||||| ||||    
T  4514242 tctttgcctttgaatttatttgtttgtttatgcacttggtcagaagaaaacaa 4514190  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 22731500 - 22731564
Alignment:
Q  54 attctctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaaatcgtacta 119  Q
    |||||||||| |||  ||||||||||||| ||| ||||| |||||||||||||| |||| ||||||    
T  22731500 attctctttgtctttgaatttatttgttt-tttctgcacgtggtcagaagaagataaattgtacta 22731564  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 39227810 - 39227738
Alignment:
Q  48 tgttatattctctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaaatcgtactat 120  Q
    ||||| |||||| ||| ||| || ||| ||||||| ||| ||||| |||||||||||| |||||| |||||||    
T  39227810 tgttacattctccttgtctttaattttctttgtttatttctgcacgtggtcagaagaaaacaaattgtactat 39227738  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 34062371 - 34062317
Alignment:
Q  76 tttgtttgtttatgcacatggtcagaagaagacaaatcgtactattacagtttga 130  Q
    ||||||||||| ||||| |||||| |||||||||||| ||||||||| |||||||    
T  34062371 tttgtttgtttctgcacgtggtcacaagaagacaaattgtactattagagtttga 34062317  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 12843129 - 12843185
Alignment:
Q  54 attctctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaa 110  Q
    ||||| |||||| | ||| || ||||||||||| |||| ||||||||||||||||||    
T  12843129 attctatttgccattaaagttctttgtttgtttttgcatatggtcagaagaagacaa 12843185  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 22186059 - 22186132
Alignment:
Q  48 tgttatattctctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaaatcgtactatt 121  Q
    ||||| |||||||||| |||  ||||  ||||||||||| ||||| | ||||||||||||||||| ||||||||    
T  22186059 tgttacattctctttgtctttgaattcctttgtttgtttctgcacgttgtcagaagaagacaaattgtactatt 22186132  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 26013789 - 26013846
Alignment:
Q  76 tttgtttgtttatgcacatggtcagaagaagacaaatcgtactattacagtttgatag 133  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||| | | ||||||||    
T  26013789 tttgtttgtttctacacatggtcagaagaagacaaattgtactatcagattttgatag 26013846  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 11848724 - 11848651
Alignment:
Q  47 gtgttatattctctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaaatcgtactat 120  Q
    |||||| ||| ||||| ||||  ||||| ||||||| ||| ||||| |||||| |||||||||||| |||||||    
T  11848724 gtgttacattatcttttcctttgaatttctttgtttttttctgcacgtggtcaaaagaagacaaattgtactat 11848651  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 17316433 - 17316377
Alignment:
Q  77 ttgtttgtttatgcacatggtcagaagaagacaaatcgtactattacagtttgatag 133  Q
    |||||||||| | ||||||||||||||||||||||| ||||||| | | ||||||||    
T  17316433 ttgtttgtttctacacatggtcagaagaagacaaattgtactatcagactttgatag 17316377  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 33546284 - 33546319
Alignment:
Q  76 tttgtttgtttatgcacatggtcagaagaagacaaa 111  Q
    ||||||||||| ||||||||||||||||||||||||    
T  33546284 tttgtttgtttctgcacatggtcagaagaagacaaa 33546319  T

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Target: scaffold0669 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 4775 - 4809
Alignment:
Q  77 ttgtttgtttatgcacatggtcagaagaagacaaa 111  Q
    |||||||||||||||| ||||||||||||||||||    
T  4775 ttgtttgtttatgcacgtggtcagaagaagacaaa 4809  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 8502414 - 8502447
Alignment:
Q  78 tgtttgtttatgcacatggtcagaagaagacaaa 111  Q
    |||||||||||||||||| |||||||||||||||    
T  8502414 tgtttgtttatgcacatgatcagaagaagacaaa 8502447  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 20748274 - 20748339
Alignment:
Q  46 tgtgttatattctctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaaa 111  Q
    ||||||| |||||||||||| |  ||||| ||||||||||| ||||| |||| |||| ||||||||    
T  20748274 tgtgttacattctctttgccgttgaatttttttgtttgtttttgcacgtggttagaaaaagacaaa 20748339  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 23692661 - 23692698
Alignment:
Q  81 ttgtttatgcacatggtcagaagaagacaaatcgtact 118  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  23692661 ttgtttatgcacgtggtcagaagaagacaaatagtact 23692698  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 11545276 - 11545312
Alignment:
Q  76 tttgtttgtttatgcacatggtcagaagaagacaaat 112  Q
    ||||||||||| | |||||||||||||||||||||||    
T  11545276 tttgtttgtttctacacatggtcagaagaagacaaat 11545312  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 17743623 - 17743667
Alignment:
Q  76 tttgtttgtttatgcacatggtcagaagaagacaaatcgtactat 120  Q
    ||||||||||| ||||| |||||| |||||||||||| |||||||    
T  17743623 tttgtttgtttctgcacgtggtcataagaagacaaatagtactat 17743667  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 23866077 - 23866121
Alignment:
Q  76 tttgtttgtttatgcacatggtcagaagaagacaaatcgtactat 120  Q
    |||||||||||||||||||| |||||||| ||||||  |||||||    
T  23866077 tttgtttgtttatgcacatgatcagaagaggacaaactgtactat 23866121  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 10686602 - 10686667
Alignment:
Q  54 attctctttgccttcaaatttatttgtttgtttatgcacatggtcagaagaagacaaatcgtacta 119  Q
    |||||||||||| |  ||||| ||||||||||| | ||| |||||||||||| |||||| ||||||    
T  10686602 attctctttgcccttgaatttctttgtttgtttctacacgtggtcagaagaatacaaattgtacta 10686667  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 13291726 - 13291682
Alignment:
Q  76 tttgtttgtttatgcacatggtcagaagaagacaaatcgtactat 120  Q
    ||||||||||| | ||| ||||||||||||||||||| |||||||    
T  13291726 tttgtttgtttctacacgtggtcagaagaagacaaattgtactat 13291682  T

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