View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12142_low_13 (Length: 335)

Name: NF12142_low_13
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12142_low_13
NF12142_low_13
[»] chr8 (2 HSPs)
chr8 (4-171)||(7423511-7423678)
chr8 (23-171)||(25877464-25877612)
[»] chr6 (3 HSPs)
chr6 (4-171)||(279570-279737)
chr6 (193-286)||(34918770-34918864)
chr6 (193-286)||(34917844-34917938)
[»] chr4 (6 HSPs)
chr4 (4-171)||(42545419-42545586)
chr4 (1-120)||(36514019-36514138)
chr4 (9-144)||(54117051-54117186)
chr4 (47-144)||(25891865-25891962)
chr4 (105-171)||(54713243-54713309)
chr4 (39-106)||(54713027-54713094)
[»] chr2 (3 HSPs)
chr2 (1-144)||(37720060-37720203)
chr2 (4-78)||(24727846-24727920)
chr2 (116-171)||(24727930-24727985)
[»] chr5 (2 HSPs)
chr5 (4-172)||(31148299-31148468)
chr5 (72-144)||(36219718-36219789)
[»] chr3 (3 HSPs)
chr3 (21-161)||(5353543-5353683)
chr3 (6-164)||(32994952-32995110)
chr3 (9-89)||(44064219-44064299)
[»] chr7 (2 HSPs)
chr7 (86-144)||(9045166-9045224)
chr7 (72-150)||(43469671-43469748)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 7423511 - 7423678
Alignment:
Q  4 acttttttcccatcatgagaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgggtt 103  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  7423511 acttttttcctatcatgggaaagttaaaccaagaccatagatttaatactttttaatttggatggctcatattcattacctgttaactttttgatgggtt 7423610  T
Q  104 atataaaacaaaaattgtgaccccacctcataattaaataatattttttgttttgtatgttgtagtgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||    
T  7423611 atataaaacaaaaattgtgaccccacctcataattaaataacattttcttttttgtatgtagtagtgg 7423678  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 25877612 - 25877464
Alignment:
Q  23 aaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgggttatataaaacaaaaattgtg 122  Q
    |||||||||||||| ||||||| ||||||||||  ||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  25877612 aaagttaaaccaaggccatagatttaatactttttaatttggatggctcagattcattacctgttaattttttgatgggttatataaaacaaaaattgtg 25877513  T
Q  123 accccacctcataattaaataatattttttgttttgtatgttgtagtgg 171  Q
    ||||||||| |||||||||||| ||||| | |||||||||| |||||||    
T  25877512 accccaccttataattaaataacattttcttttttgtatgtggtagtgg 25877464  T

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Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 279570 - 279737
Alignment:
Q  4 acttttttcccatcatgagaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgggtt 103  Q
    |||||||| |||||| | ||||||||||||||||||||||| ||||||||||  |||||||||| |||||||| ||||||||||||||||||| ||||||    
T  279570 actttttttccatcacgggaaagttaaaccaagaccatagatttaatactttttaatttggatgactcagattcattacctgttaactttttgatgggtt 279669  T
Q  104 atataaaacaaaaattgtgaccccacctcataattaaataatattttttgttttgtatgttgtagtgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||    
T  279670 atataaaacaaaaattgtgaccccacctcataattaaataacattttcttttttgtatgtagtagtgg 279737  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 34918864 - 34918770
Alignment:
Q  193 tcaatttaagatgtctgcaaa-acgatttagcttgttgtttcaaaaatatgatttctggcaagtttaattggctattctagttggatgagaagtg 286  Q
    ||||||||  ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  34918864 tcaatttacaatgtctgcaaatacgatttagcttcttgtttcaaaaatatgatttctggcaagtctaattggctgttctagttggatgagaagtg 34918770  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 34917938 - 34917844
Alignment:
Q  193 tcaatttaagatgtctgcaaa-acgatttagcttgttgtttcaaaaatatgatttctggcaagtttaattggctattctagttggatgagaagtg 286  Q
    |||||||| ||||||||| || ||| ||| |||| |||||| ||||||| |||||||||||||  |||||||  ||||||||| |||||||||||    
T  34917938 tcaatttatgatgtctgcgaatacgtttttgcttcttgtttaaaaaatacgatttctggcaaggctaattgggcattctagtttgatgagaagtg 34917844  T

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Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 42545586 - 42545419
Alignment:
Q  4 acttttttcccatcatgagaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgggtt 103  Q
    ||||||||||||||||  |||||||||||||||  |||||| ||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  42545586 acttttttcccatcataggaaagttaaaccaaggtcatagatttaatactttttaatttggatggctcagattcattacctgttaactttttgatgggtt 42545487  T
Q  104 atataaaacaaaaattgtgaccccacctcataattaaataatattttttgttttgtatgttgtagtgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||    
T  42545486 atataaaacaaaaattgtgaccccacctcataattaaataacattttcttttttgtatgtagtagtgg 42545419  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36514019 - 36514138
Alignment:
Q  1 caaacttttttcccatcatgagaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgg 100  Q
    ||||||||||||||||||| | |||||||||||||  ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  36514019 caaacttttttcccatcataaaaaagttaaaccaaagccatagatttaatactttaaaatttgaatggttcagatttattacctgttaactttttgttgg 36514118  T
Q  101 gttatataaaacaaaaattg 120  Q
    ||||||||||||||||||||    
T  36514119 gttatataaaacaaaaattg 36514138  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 54117186 - 54117051
Alignment:
Q  9 tttcccatcatgagaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgggttatata 108  Q
    |||||||| ||| |||||||||| || || ||| ||  |||||||||  |||||||| |||| |||| | | |||||||||||||||| |||||||||||    
T  54117186 tttcccatgatgggaaagttaaagcatgatcattgatataatactttttaatttggacggctgagatgtgtgacctgttaactttttgatgggttatata 54117087  T
Q  109 aaacaaaaattgtgaccccacctcataattaaataa 144  Q
    |||||||||  |||||||||||||||||||||||||    
T  54117086 aaacaaaaacagtgaccccacctcataattaaataa 54117051  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 25891962 - 25891865
Alignment:
Q  47 taatactttaaaatttggatggctcagatttattacctgttaactttttgttgggttatataaaacaaaaattgtgaccccacctcataattaaataa 144  Q
    |||||||||  ||||||| || ||||||| | | |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||    
T  25891962 taatactttttaatttgggtgactcagatgtgtgacctgttaactttttgatgggttatataaaacaaaaactgtgaccccacctcgtaattaaataa 25891865  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 54713243 - 54713309
Alignment:
Q  105 tataaaacaaaaattgtgaccccacctcataattaaataatattttttgttttgtatgttgtagtgg 171  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||  |||||||    
T  54713243 tataaaacaaaaattgtgaccccacatcataattaaataacattttctgttttgtatgcagtagtgg 54713309  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 54713027 - 54713094
Alignment:
Q  39 catagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgggttata 106  Q
    |||||| ||||||| ||| ||||||||||| |||||||||||| |||||||||||||||||| |||||    
T  54713027 catagatttaatacattataatttggatggttcagatttattatctgttaactttttgttggattata 54713094  T

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Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 37720060 - 37720203
Alignment:
Q  1 caaacttttttcccatcatgagaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgg 100  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  37720060 caaactttttttccatcatgggaaagttaaaccaagaccatagatttaatattttataatttggatggctcagattcattacctgctaactttttgttgg 37720159  T
Q  101 gttatataaaacaaaaattgtgaccccacctcataattaaataa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37720160 gttatataaaacaaaaattgtgaccccacctcataattaaataa 37720203  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 24727846 - 24727920
Alignment:
Q  4 acttttttcccatcatgagaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagattta 78  Q
    |||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  24727846 acttttttcccatcatggaaaagttaaaccaaggccatagatttaatactttaaaatttggatggctcaaattta 24727920  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 24727930 - 24727985
Alignment:
Q  116 aattgtgaccccacctcataattaaataatattttttgttttgtatgttgtagtgg 171  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||    
T  24727930 aattgtgaccccacctcataattaaataacattttcttttttgtatgtagtagtgg 24727985  T

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Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 31148468 - 31148299
Alignment:
Q  4 acttttttcccatcatgagaaagttaaaccaagaccatagactt-aatactttaaaatttggatggctcagatttattacctgttaactttttgttgggt 102  Q
    ||||||||||||||||| ||||||||||||||||||||||| || ||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||    
T  31148468 acttttttcccatcatgggaaagttaaaccaagaccatagattttaatactttttaatttggatggctcagatttactac-tgttaactttttgttgggt 31148370  T
Q  103 tatataaaacaaaaattgtgaccccacctcataattaaataata-ttttttgttttgtatgttgtagtgga 172  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||||||    
T  31148369 tatataaaacaaaaattgtgaccccacctcataattaaataacatttttttgttttggatgtagtagtgga 31148299  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 36219718 - 36219789
Alignment:
Q  72 agatttattacctgttaactttttgttgggttatataaaacaaaaattgtgaccccacctcataattaaataa 144  Q
    |||||| |||||| |||||||||||   |||  ||| |||||||||| |||||||||||||||||||||||||    
T  36219718 agatttgttacctattaactttttgactggtc-tatcaaacaaaaatcgtgaccccacctcataattaaataa 36219789  T

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Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 5353543 - 5353683
Alignment:
Q  21 agaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgggttatataaaacaaaaattg 120  Q
    ||||||||||||||||| |||||| |||||| |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5353543 agaaagttaaaccaagatcatagatttaatattttataatttggatggttcagatttattacctgctaactttttgttgggttatataaaacaaaaattg 5353642  T
Q  121 tgaccccacctcataattaaataatattttttgttttgtat 161  Q
    |||||| ||||||||| |||||||||| || ||||||||||    
T  5353643 tgacccaacctcataagtaaataatatcttctgttttgtat 5353683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 32994952 - 32995110
Alignment:
Q  6 ttttttcccatcatgagaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaactttttgttgggttat 105  Q
    ||||||||||||||| |||||||||||||||  |||||| |||||| |||  ||||||||||| | ||||| ||| ||| ||||||||||| ||||||||    
T  32994952 ttttttcccatcatgggaaagttaaaccaaggtcatagatttaatattttttaatttggatggtttagattcattgcctattaactttttgatgggttat 32995051  T
Q  106 ataaaacaaaaattgtgaccccacctcataattaaataatattttttgttttgtatgtt 164  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||| | |||||||||||    
T  32995052 ataaaacaaaaattgtgactccacctcatatttaaataacattttcttttttgtatgtt 32995110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 44064219 - 44064299
Alignment:
Q  9 tttcccatcatgagaaagttaaaccaagaccatagacttaatactttaaaatttggatggctcagatttattacctgttaa 89  Q
    |||||||||||| ||||||| |||||  |||||||| ||||||||||   ||||| |||||| |||||||| |||| ||||    
T  44064219 tttcccatcatgggaaagttgaaccacaaccatagatttaatacttttttatttgaatggctaagatttatgacctattaa 44064299  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 9045224 - 9045166
Alignment:
Q  86 ttaactttttgttgggttatataaaacaaaaattgtgaccccacctcataattaaataa 144  Q
    ||||||||| | ||| |||||||||||||||| | ||||||||||||||||||||||||    
T  9045224 ttaacttttggatggcttatataaaacaaaaactatgaccccacctcataattaaataa 9045166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 43469671 - 43469748
Alignment:
Q  72 agatttattacctgttaactttttgttgggttatataaaacaaaaattgtgaccccacctcataattaaataatatttt 150  Q
    |||||| ||||||||||||||||||   |||  ||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  43469671 agatttgttacctgttaactttttgactggtc-tatcaaacaaaaagtgtgatcccacctcataattaaataacatttt 43469748  T

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