View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12142_low_17 (Length: 303)
Name: NF12142_low_17
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12142_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 31548438 - 31548159
Alignment:
| Q |
19 |
acaagaagaagtttttgtagaagtttcacagcttgtacaaagtgctcttgatggttataaggtaagtaaaagttcttctgttgtaagtgttgtatagcat |
118 |
Q |
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| T |
31548438 |
acaagaagaagtgtttgtagaagtttcacagcttgtgcaaagtgctcttgatggttataaggtaattcaaagctcttctgctgtaagctttgtatatcat |
31548339 |
T |
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| Q |
119 |
ttttcacatttttccttggatttctttggttctgatctatcaatgctacatataaggcacatgtcagttatgctgcaattcaaatatgtatgtttttaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||| |||| |
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| T |
31548338 |
ttttcacatttttccttggatttctttggttctgatctatcaatgctacatataaggcacgtctcagttatgctgctattcaaatatgcatg----taaa |
31548243 |
T |
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| Q |
219 |
tcaatatgcatacatacacattaaccattggaatttattctgaaatacgatg-ttttcattttaggtttgcatctttgcctatg |
301 |
Q |
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|||||||| |||||||||||||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||||||||| |
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| T |
31548242 |
tcaatatggatacatacacattaaccatttggatttattctgaaatatgaagtttttcattttaggtttgcatctttgcctatg |
31548159 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 34650729 - 34650793
Alignment:
| Q |
19 |
acaagaagaagtttttgtagaagtttcacagcttgtacaaagtgctcttgatggttataaggtaa |
83 |
Q |
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|||||||||||| ||| ||| ||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
34650729 |
acaagaagaagtatttacggaaatttcacaacttgtgcaaagtgctcttgatggttataaggtaa |
34650793 |
T |
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