View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12142_low_19 (Length: 273)

Name: NF12142_low_19
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12142_low_19
NF12142_low_19
[»] chr2 (8 HSPs)
chr2 (22-259)||(8413765-8414002)
chr2 (22-87)||(8435701-8435766)
chr2 (91-211)||(14296254-14296374)
chr2 (96-211)||(18693110-18693225)
chr2 (91-207)||(31092320-31092436)
chr2 (91-208)||(18811704-18811821)
chr2 (91-210)||(37344623-37344742)
chr2 (22-68)||(8377769-8377815)
[»] chr3 (5 HSPs)
chr3 (90-259)||(16893080-16893249)
chr3 (96-172)||(35526596-35526672)
chr3 (96-207)||(29346807-29346918)
chr3 (91-181)||(51524871-51524961)
chr3 (90-187)||(31067178-31067276)
[»] chr1 (11 HSPs)
chr1 (91-211)||(49491876-49491995)
chr1 (91-209)||(50903480-50903598)
chr1 (90-207)||(13061962-13062079)
chr1 (90-208)||(3374306-3374424)
chr1 (111-181)||(34566273-34566343)
chr1 (90-208)||(41035024-41035142)
chr1 (91-180)||(17114741-17114830)
chr1 (90-178)||(19394156-19394244)
chr1 (112-178)||(39332359-39332425)
chr1 (213-255)||(49491732-49491774)
chr1 (215-256)||(50903328-50903369)
[»] chr7 (2 HSPs)
chr7 (91-211)||(26449532-26449652)
chr7 (96-180)||(19407870-19407954)
[»] chr4 (5 HSPs)
chr4 (96-211)||(24239839-24239954)
chr4 (98-210)||(16832137-16832249)
chr4 (90-180)||(37050003-37050094)
chr4 (137-210)||(18522296-18522369)
chr4 (90-210)||(16593766-16593886)
[»] chr6 (4 HSPs)
chr6 (96-211)||(4263365-4263480)
chr6 (91-211)||(25167847-25167967)
chr6 (91-182)||(10990028-10990119)
chr6 (91-211)||(3949338-3949458)
[»] scaffold0531 (1 HSPs)
scaffold0531 (90-210)||(10262-10382)
[»] chr8 (4 HSPs)
chr8 (96-210)||(8831219-8831333)
chr8 (91-212)||(27786782-27786903)
chr8 (91-207)||(29369107-29369223)
chr8 (91-205)||(36206422-36206536)
[»] chr5 (5 HSPs)
chr5 (91-212)||(36868296-36868417)
chr5 (96-207)||(19215391-19215502)
chr5 (131-211)||(36150641-36150721)
chr5 (91-211)||(788271-788391)
chr5 (119-211)||(32278702-32278794)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 8414002 - 8413765
Alignment:
Q  22 ggattgctttaaatttaggttggtatcctctttgcactttttaggttgacatgcttgtttccattgtgaaaagcagaagaagcaggcgaacaaagtgaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  8414002 ggattgctttaaatttaggttggtatcctctttgcactttttaggttgacatgcttgtttccattgcaaaaagcagaagaagcaggcgaacaaagtgaag 8413903  T
Q  122 cctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatactgaatagttggttcaaatctttgtga 221  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8413902 cctactagcttcaactcaaccggaatgaggacccgtgctcaaaagggtacctccaaagctgtcctgccatatactgaatagttggttcaaatctttgtga 8413803  T
Q  222 acctgggtgttaagctagtagcttctgccatttctctg 259  Q
    || ||| |||||||||||||||||||||||||||||||    
T  8413802 acatggttgttaagctagtagcttctgccatttctctg 8413765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 8435766 - 8435701
Alignment:
Q  22 ggattgctttaaatttaggttggtatcctctttgcactttttaggttgacatgcttgtttccattg 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8435766 ggattgctttaaatttaggttggtatcctctttgcactttttaggttgacatgcttgtttccattg 8435701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 14296374 - 14296254
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| |||||||||||  ||||||| |||||||||||||||| ||||||||||||||||| || ||||   |||||| ||||||||||| || |||| ||    
T  14296374 aaagaagaagaagcagatgaacaaaatgaagcctactagctttaactcagccggaatgagcactcgtgtccaaaagggtacctccaaagatgccttggca 14296275  T
Q  191 tatactgaatagttggttcaa 211  Q
     ||||  ||||||||||||||    
T  14296274 gatacataatagttggttcaa 14296254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 18693110 - 18693225
Alignment:
Q  96 agaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatac 195  Q
    |||||||||  || |||||||||||| || ||||||| |||| |||||||||||||||| |||| ||||||| | ||||||||| ||||||| || ||||    
T  18693110 agaagaagcgtgcaaacaaagtgaagtctgctagctttaactaagccggaatgaggacctgtgcctaaaagggttcctccaaagttgtcttgacagatac 18693209  T
Q  196 tgaatagttggttcaa 211  Q
      ||||||||||||||    
T  18693210 aaaatagttggttcaa 18693225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 31092320 - 31092436
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| ||||||| || | ||| ||||||| |||| |||| || |||||||||||||||||||| |||||  |||||| |||||||||||  |||||||||    
T  31092320 aaagaagaagaatcacgtgaataaagtgatgccttctagatttaactcagccggaatgaggactcgtgcccaaaagggtacctccaaagtcgtcttgcca 31092419  T
Q  191 tatactgaatagttggt 207  Q
     |||| |||||||||||    
T  31092420 gatacagaatagttggt 31092436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 18811821 - 18811704
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| |||||||||||| | | |||||||||| |  |||||| ||||||||||||||||||||||||||  ||||||   |||||||||||  |||| ||    
T  18811821 aaagaagaagaagcaggtgcataaagtgaagctttatagctttaactcagccggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgaca 18811722  T
Q  191 tatactgaatagttggtt 208  Q
     |||| ||||||||||||    
T  18811721 gatacagaatagttggtt 18811704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 37344623 - 37344742
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| ||||||| |||| |||||||||||| | | |||| || |||||||||||||||||||  |||||  |||||| || ||||||||| | |||| ||    
T  37344623 aaagaagaagaaacaggtgaacaaagtgaatcattctagttttaactcagccggaatgaggattcgtgcccaaaagggtatctccaaagccgccttgaca 37344722  T
Q  191 tatactgaatagttggttca 210  Q
    |||||  |||||||| ||||    
T  37344723 tatacataatagttgattca 37344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 8377769 - 8377815
Alignment:
Q  22 ggattgctttaaatttaggttggtatcctctttgcactttttaggtt 68  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  8377769 ggattggtttaaatttaggttgatatcctctttggactttttaggtt 8377815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 16893080 - 16893249
Alignment:
Q  90 aaaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcc 189  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||    
T  16893080 aaaagcaaaagaagcaggtgaacaaagtgaagcctactaggttcaactcagccggaatgaggacccgtgctcaaaagggtgcctccaaagctgccttgcc 16893179  T
Q  190 atatactgaatagttggttcaaatctttgtgaacctgggtgttaagctagtagcttctgccatttctctg 259  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16893180 atataccgaatagttggttcaaatctctgtgaacctgggtgttaagctagtagcttctgccatttctctg 16893249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 35526672 - 35526596
Alignment:
Q  96 agaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacc 172  Q
    |||||||||||| ||||||||||| |||| ||||||| ||||| ||||||||||||||||||||  |||||| ||||    
T  35526672 agaagaagcaggtgaacaaagtgatgccttctagctttaactcggccggaatgaggacccgtgcccaaaagggtacc 35526596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 29346807 - 29346918
Alignment:
Q  96 agaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatac 195  Q
    |||||||||||| |||||| |||| ||||  |||||| |||| |||||||||||||||||||||  |||||  |||||||||||| | |||| || ||||    
T  29346807 agaagaagcaggtgaacaacgtgatgccttatagctttaacttagccggaatgaggacccgtgcacaaaagagtacctccaaagccgccttgacagatac 29346906  T
Q  196 tgaatagttggt 207  Q
      ||||||||||    
T  29346907 ataatagttggt 29346918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 51524871 - 51524961
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagct 181  Q
    |||| |||||||||||| | | ||||||| ||||  |||||| ||||||||||||||||||||||||||  ||||||   |||||||||||    
T  51524871 aaagaagaagaagcaggtgcataaagtgaggccttatagctttaactcagccggaatgaggacccgtgcccaaaagggctcctccaaagct 51524961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 31067178 - 31067276
Alignment:
Q  90 aaaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccgg-aatgaggacccgtgcttaaaaggatacctccaaagctgtcttg 187  Q
    ||||| |||||||||| | | ||||||||| || | ||||||| ||||||| ||| ||||||||||||||| ||||||  || ||||||  ||||||||    
T  31067178 aaaagaagaagaagcatgtgcacaaagtgaggcttgctagctttaactcagtcgggaatgaggacccgtgcctaaaagtgtaactccaatcctgtcttg 31067276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 49491995 - 49491876
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||| || |||| |     
T  49491995 aaagcagaagaagcatgtgaacaaagtga-gcctactagcttcaactcagccggaatgaggacccgtgcccaaaagggtacctccaaagttgccttggcg 49491897  T
Q  191 tatactgaatagttggttcaa 211  Q
    ||||| |||||||||||||||    
T  49491896 tataccgaatagttggttcaa 49491876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 50903598 - 50903480
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||  | |||||||||||| | |||| ||    
T  50903598 aaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagccgaaatgaggacccgtgcccaaagcggtacctccaaagccgacttggca 50903499  T
Q  191 tatactgaatagttggttc 209  Q
    ||||| || ||||||||||    
T  50903498 tataccgattagttggttc 50903480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 13062079 - 13061962
Alignment:
Q  90 aaaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcc 189  Q
    ||||| |||||||||||| ||||||||||| ||||  |||||| |||||||||| |||||||||||||||| |||||  |||||||||||| | |||| |    
T  13062079 aaaagaagaagaagcaggtgaacaaagtgatgccttttagctttaactcagccgaaatgaggacccgtgctgaaaagagtacctccaaagccgccttgac 13061980  T
Q  190 atatactgaatagttggt 207  Q
    | |||| ||||| |||||    
T  13061979 aaatacagaataattggt 13061962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 3374306 - 3374424
Alignment:
Q  90 aaaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcc 189  Q
    ||||| |||||||||| | |||||||||||||||  |||| || ||||||||||||||||||||  ||||  |||||| || ||||||||||| ||||      
T  3374306 aaaagaagaagaagcaagtgaacaaagtgaagccggctagatttaactcagccggaatgaggacatgtgcccaaaagggtagctccaaagctgccttgga 3374405  T
Q  190 atatactgaatagttggtt 208  Q
    |  ||| ||||||||||||    
T  3374406 agctacagaatagttggtt 3374424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 34566343 - 34566273
Alignment:
Q  111 acaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagct 181  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||| || | ||||||||    
T  34566343 acaaagtgaagtctactagcttcaactcagctggaatgaggactcgtgtttaaaagggtatccccaaagct 34566273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 41035142 - 41035024
Alignment:
Q  90 aaaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcc 189  Q
    ||||| |||||||||||| ||| |   |||||||| ||||||| ||||||||||||||||||||||||||  |||| |   |||||||||||  |||| |    
T  41035142 aaaagaagaagaagcaggtgaatattttgaagccttctagctttaactcagccggaatgaggacccgtgcccaaaaaggctcctccaaagctaccttggc 41035043  T
Q  190 atatactgaatagttggtt 208  Q
    | || ||||||||||||||    
T  41035042 aaattctgaatagttggtt 41035024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 17114830 - 17114741
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagc 180  Q
    |||| ||||||| || | |||||||||||||||| ||||||| ||||| ||| |||||||||||| ||   |||||| ||||||||||||    
T  17114830 aaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccagaatgaggacccatgtccaaaagggtacctccaaagc 17114741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 19394244 - 19394156
Alignment:
Q  90 aaaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaa 178  Q
    ||||| |||||||||| | || ||||||||||||| || |||| |||| ||| |||||||||||||||||  |||||| ||||| ||||    
T  19394244 aaaagaagaagaagcatgtgagcaaagtgaagccttcttgctttaacttagctggaatgaggacccgtgcccaaaagggtaccttcaaa 19394156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 39332359 - 39332425
Alignment:
Q  112 caaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaa 178  Q
    ||||||||||||| || |||| |||||||||| |||||||||||||||  |||||| ||||| ||||    
T  39332359 caaagtgaagcctgcttgctttaactcagccgaaatgaggacccgtgcccaaaagggtaccttcaaa 39332425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 49491774 - 49491732
Alignment:
Q  213 tctttgtgaacctgggtgttaagctagtagcttctgccatttc 255  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  49491774 tctttgtgaacctgggtgtttagtcagtagcttctgccatttc 49491732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 50903369 - 50903328
Alignment:
Q  215 tttgtgaacctgggtgttaagctagtagcttctgccatttct 256  Q
    |||||||||| ||||||| ||||||||||||||||| |||||    
T  50903369 tttgtgaacccgggtgtttagctagtagcttctgccttttct 50903328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 26449652 - 26449532
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||   |||||| |||||||||| ||| || | ||    
T  26449652 aaagcagaagaagcaggtgaacagagtgaagcctactagcttcagctcagccggaatgaggactcgtgtccaaaagggtacctccaaaactgcctcgaca 26449553  T
Q  191 tatactgaatagttggttcaa 211  Q
    |||||  ||||||||||||||    
T  26449552 tataccaaatagttggttcaa 26449532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 19407954 - 19407870
Alignment:
Q  96 agaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagc 180  Q
    |||||||||||| |||||||||||  ||| ||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||    
T  19407954 agaagaagcaggtgaacaaagtgattccttctagctttaactcagccggaatgaggacccgtgcccaaaagggtacctccaaagc 19407870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 24239954 - 24239839
Alignment:
Q  96 agaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatac 195  Q
    |||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||  |||||| |||||| |||||| ||||| || ||||    
T  24239954 agaagaagtaggtgaataaagtgaagcctactagctttaactcagccggaatgaggacccgtgcccaaaagggtacctcaaaagctatcttggcagatac 24239855  T
Q  196 tgaatagttggttcaa 211  Q
      ||||||||| ||||    
T  24239854 ataatagttggctcaa 24239839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 16832249 - 16832137
Alignment:
Q  98 aagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatactg 197  Q
    |||||||| | |||||||||||||||||||| ||| |||||||  ||||||||||| |||| | |||||| | ||||||||||||||||| || ||||      
T  16832249 aagaagcatgtgaacaaagtgaagcctactaactttaactcagttggaatgaggacacgtgttcaaaagggtgcctccaaagctgtcttggcagatacat 16832150  T
Q  198 aatagttggttca 210  Q
    |||||| ||||||    
T  16832149 aatagtcggttca 16832137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 37050003 - 37050094
Alignment:
Q  90 aaaagcagaagaagcaggcgaacaaagtgaagccta-ctagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagc 180  Q
    ||||| ||||||| || | ||||||||||||||||  |||| || |||||||||||||||||||| |||||  |||||| ||||||||||||    
T  37050003 aaaagaagaagaaacatgtgaacaaagtgaagcctttctagttttaactcagccggaatgaggactcgtgcccaaaagggtacctccaaagc 37050094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 18522369 - 18522296
Alignment:
Q  137 tcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatactgaatagttggttca 210  Q
    |||||||||||||||| ||||||| |||||||| |||||||||  | |||| || |||  ||||||||||||||    
T  18522369 tcagccggaatgaggatccgtgctcaaaaggatgcctccaaagtcgacttggcagatatagaatagttggttca 18522296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 16593886 - 16593766
Alignment:
Q  90 aaaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcc 189  Q
    ||||| || ||||||| | | ||||||||| |||| |||| || |||| |||||||||||| ||||||||  |||||  || | |||||| ||||||| |    
T  16593886 aaaagaagtagaagcacgtgcacaaagtgaggcctgctagttttaacttagccggaatgagaacccgtgcccaaaagagtaacgccaaagttgtcttggc 16593787  T
Q  190 atatactgaatagttggttca 210  Q
    |  |||  |||||||||||||    
T  16593786 agctacataatagttggttca 16593766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 4263480 - 4263365
Alignment:
Q  96 agaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatac 195  Q
    |||||||||| |  |||||| |||||||| |||| || ||||||||||||||||||||||||||| |||||| | ||||||||  ||||||| || ||||    
T  4263480 agaagaagcatgtaaacaaaatgaagcctgctagttttaactcagccggaatgaggacccgtgctcaaaagggttcctccaaaattgtcttggcagatac 4263381  T
Q  196 tgaatagttggttcaa 211  Q
     |||||||||||||||    
T  4263380 ggaatagttggttcaa 4263365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 25167847 - 25167967
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| ||||||| || | |||||||||||||||| |||| || ||||||||||||| |||||| | |||  |||||| |||||||||||| | |||| ||    
T  25167847 aaagaagaagaaacatgtgaacaaagtgaagccttctagttttaactcagccggaaagaggactcatgcccaaaagggtacctccaaagccgccttgaca 25167946  T
Q  191 tatactgaatagttggttcaa 211  Q
     |||| |||||||||||||||    
T  25167947 gatacagaatagttggttcaa 25167967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 10990028 - 10990119
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctg 182  Q
    |||| ||||| |||| | |||||||||||| ||| ||||||| |||| ||||| ||||||||| |||||  |||||| | ||||||||||||    
T  10990028 aaagaagaagcagcaagagaacaaagtgaatccttctagctttaacttagccgaaatgaggactcgtgcacaaaagggttcctccaaagctg 10990119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 3949338 - 3949458
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| ||||||| |||| ||| |||||||||| |  ||| || |||| |||| |||||||||| |||| | | |||| |||||||||||| | |||| ||    
T  3949338 aaagaagaagaaacaggtgaataaagtgaagctttttagttttaactgagccagaatgaggactcgtgttcagaagggtacctccaaagccgccttgaca 3949437  T
Q  191 tatactgaatagttggttcaa 211  Q
     || | ||||||||| |||||    
T  3949438 gatgcagaatagttgattcaa 3949458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 10262 - 10382
Alignment:
Q  90 aaaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcc 189  Q
    ||||| |||||||||| | | ||||||||| |||| |||| || |||||||||||||||||||||||||| ||||||  || |||||||||||||||| |    
T  10262 aaaagaagaagaagcacgtgcacaaagtgaggcctgctagttttaactcagccggaatgaggacccgtgcctaaaagagtaactccaaagctgtcttggc 10361  T
Q  190 atatactgaatagttggttca 210  Q
    |  |||  |||||||||||||    
T  10362 agctacataatagttggttca 10382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 8831333 - 8831219
Alignment:
Q  96 agaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatac 195  Q
    ||||||||||   ||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||  || |||||||| ||||| | ||  |||    
T  8831333 agaagaagcacatgaacaaagtgaggcctgctagctttaactcagccggaatgaggacccgtgctcaaaagtgtaactccaaagttgtctcgacagctac 8831234  T
Q  196 tgaatagttggttca 210  Q
    ||||||||| |||||    
T  8831233 tgaatagttagttca 8831219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 27786903 - 27786782
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| |||| ||||||  ||| |||||||||||| ||||||| ||||||||||||||||||| ||||||  |||| | | |||||||||||  |||| ||    
T  27786903 aaagaagaataagcagatgaataaagtgaagccttctagctttaactcagccggaatgaggagccgtgcccaaaatggttcctccaaagctaccttgaca 27786804  T
Q  191 tatactgaatagttggttcaaa 212  Q
     ||||  |||||||||||||||    
T  27786803 gatacaaaatagttggttcaaa 27786782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 29369107 - 29369223
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| |||||||||| | ||| ||||||| |||| | ||||| |||| |||| ||||||||||||||||  |||||||||| |||||| | | |||| ||    
T  29369107 aaagaagaagaagcacgtgaataaagtgatgccttcaagctttaactgagccagaatgaggacccgtgcccaaaaggatacatccaaatccgccttggca 29369206  T
Q  191 tatactgaatagttggt 207  Q
     |||| |||||||||||    
T  29369207 gatacagaatagttggt 29369223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 36206536 - 36206422
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| ||||||||||   ||| |||||||||||| ||||||| |||| || |||||||||||| ||||| ||||||  | ||||||||| || |||| ||    
T  36206536 aaagaagaagaagcaaatgaataaagtgaagccttctagctttaacttagtcggaatgaggactcgtgcctaaaagagttcctccaaagttgccttgaca 36206437  T
Q  191 tatactgaatagttg 205  Q
     ||| ||| ||||||    
T  36206436 gatagtgactagttg 36206422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 36868296 - 36868417
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| |||||||||| | ||| |||||||||||| ||||||| |||||||||||||||||| ||||||   |||||| | |||||||||||  |||| ||    
T  36868296 aaagaagaagaagcaagtgaataaagtgaagccttctagctttaactcagccggaatgagggcccgtgtccaaaagggttcctccaaagctaccttgaca 36868395  T
Q  191 tatactgaatagttggttcaaa 212  Q
     ||||  |||||||||||||||    
T  36868396 gatacataatagttggttcaaa 36868417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 19215391 - 19215502
Alignment:
Q  96 agaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatac 195  Q
    |||||||||||| ||||||||||| |||  ||||||| ||||||||| ||||||||||||| ||  |||||| ||||| |||| ||| |||| || ||||    
T  19215391 agaagaagcaggtgaacaaagtgatgccgtctagctttaactcagcccgaatgaggacccgagcccaaaagggtaccttcaaaactgccttggcagatac 19215490  T
Q  196 tgaatagttggt 207  Q
     |||||||||||    
T  19215491 agaatagttggt 19215502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 36150721 - 36150641
Alignment:
Q  131 ttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatactgaatagttggttcaa 211  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||||||||  || | |||||||  ||||||||| ||||    
T  36150721 ttcaactcagccggaatgaggactcgtgcccaaaaggatacctccaaagctacctcggcatataccaaatagttggctcaa 36150641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 788391 - 788271
Alignment:
Q  91 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgcca 190  Q
    |||| |||||||||||  ||||||| |||||||| ||| ||| ||||||| ||  |||||||| |||||  |||||| | |||||||||| | |||| ||    
T  788391 aaagaagaagaagcagatgaacaaaatgaagccttctaactttaactcagacgctatgaggactcgtgcccaaaagggttcctccaaagccgccttgaca 788292  T
Q  191 tatactgaatagttggttcaa 211  Q
    ||||  ||||| |||||||||    
T  788291 tatatagaataattggttcaa 788271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 32278794 - 32278702
Alignment:
Q  119 aagcctactagcttcaactcagccggaatgaggacccgtgcttaaaaggatacctccaaagctgtcttgccatatactgaatagttggttcaa 211  Q
    |||||| |||| || |||||||||||||||| ||  ||| |  |||||| |||||||||||| | |||| || |||| ||||||| |||||||    
T  32278794 aagccttctagttttaactcagccggaatgaagattcgttcccaaaagggtacctccaaagccgccttgacagatacagaatagtgggttcaa 32278702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University