View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12142_low_23 (Length: 252)

Name: NF12142_low_23
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12142_low_23
NF12142_low_23
[»] chr5 (17 HSPs)
chr5 (20-237)||(36445510-36445727)
chr5 (20-237)||(36435610-36435806)
chr5 (43-237)||(36467978-36468160)
chr5 (159-233)||(36492969-36493043)
chr5 (63-144)||(36435962-36436043)
chr5 (59-123)||(36435880-36435944)
chr5 (60-153)||(36435980-36436073)
chr5 (164-205)||(36476148-36476189)
chr5 (59-102)||(36445822-36445865)
chr5 (75-153)||(36435875-36435953)
chr5 (165-205)||(36493164-36493204)
chr5 (59-102)||(36468228-36468271)
chr5 (75-144)||(36435953-36436022)
chr5 (59-96)||(36475908-36475945)
chr5 (51-91)||(36411253-36411293)
chr5 (59-123)||(36436000-36436064)
chr5 (116-172)||(36475995-36476051)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 36445510 - 36445727
Alignment:
Q  20 accgtgaccaccgtggcctcctccaccgtgtccaccgtgaccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttg 119  Q
    ||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445510 accgtgaccaccgtgaccacctccaccgtgtcctccgtgtccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttg 36445609  T
Q  120 taactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttagcatcatttacttcattagtcttttcctcagtttgcgcgg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  36445610 taactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttggcatcatttacttcattagtcttttcctcagtttgcacgg 36445709  T
Q  220 caacagattcagcagcac 237  Q
    ||||||||||||||||||    
T  36445710 caacagattcagcagcac 36445727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 36435610 - 36435806
Alignment:
Q  20 accgtgaccaccgtggcctcctccaccgtgtccaccgtgaccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttg 119  Q
    ||||||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36435610 accgtgaccaccgtgaccacctccaccatgtcccccgtgtccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttg 36435709  T
Q  120 taactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttagcatcatttacttcattagtcttttcctcagtttgcgcgg 219  Q
    |||||||||||||||||||||||                     ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  36435710 taactacctccaccatggttgta---------------------accaccaccatatttggcatcatttacttcattagtcttttcctcagtttgcacgg 36435788  T

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Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 36467978 - 36468160
Alignment:
Q  43 caccgtgtccaccgtgaccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgta 142  Q
    ||||||| | |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| | |||| |    
T  36467978 caccgtgactaccgtgtccacctccaccatggttgtaaccacctcaaccgtggtggtaactacctcgtccatggttgtaactagctccacctttgttgaa 36468077  T
Q  143 acttccaccatggttgtaactaccaccaccatatttagcatcatttacttcattagtcttttcctcagtttgcgcggcaacagattcagcagcac 237  Q
    ||| |||||             |||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36468078 actaccacc------------tccaccaccatttctggcatcatttacttcattagtcttttcctcagtttgcacggcaacagattcagcagcac 36468160  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 36492969 - 36493043
Alignment:
Q  159 taactaccaccaccatatttagcatcatttacttcattagtcttttcctcagtttgcgcggcaacagattcagca 233  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  36492969 taaccaccaccaccatatttggcatcatttacttcattagtcttttcctcagtttggacggcaacaaattcagca 36493043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 36435962 - 36436043
Alignment:
Q  63 cctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaac 144  Q
    |||||||| |||||||| ||||||||||||| || ||||| ||| || ||||||||||||| ||||||||| | ||||||||    
T  36435962 cctccaccatggttgtagccacctccaccgttgttgtaaccaccaccaccatggttgtaaccacctccaccgttgttgtaac 36436043  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 36435880 - 36435944
Alignment:
Q  59 accacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaac 123  Q
    ||||||||| || ||||||||||||||||||||||||| ||||| |||||| || ||||||||||    
T  36435880 accacctccgccatggttgtaaccacctccaccgtggttgtaaccacctccgccgtggttgtaac 36435944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 36435980 - 36436073
Alignment:
Q  60 ccacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaacttccaccat 153  Q
    ||||||||||||| |||||||||||| ||||| |||| ||||| |||||| || | |||||||| ||| || || ||||| |||| ||||||||    
T  36435980 ccacctccaccgttgttgtaaccaccaccaccatggttgtaaccacctccaccgttgttgtaaccaccaccgccgtggttataacctccaccat 36436073  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 36476148 - 36476189
Alignment:
Q  164 accaccaccatatttagcatcatttacttcattagtcttttc 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  36476148 accaccaccatatttggcatcatttacttcattagtcttttc 36476189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 36445822 - 36445865
Alignment:
Q  59 accacctccaccgtggttgtaaccacctccaccgtggtggtaac 102  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  36445822 accacctccaccatggttgtaaccacctccaccgttgtggtaac 36445865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 153
Target Start/End: Original strand, 36435875 - 36435953
Alignment:
Q  75 ttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaacttccaccat 153  Q
    |||||||||||||| || |||| ||||| |||||| || |||||||||| |||||| || ||||||||||  |||||||    
T  36435875 ttgtaaccacctccgccatggttgtaaccacctccaccgtggttgtaaccacctccgccgtggttgtaaccaccaccat 36435953  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 36493164 - 36493204
Alignment:
Q  165 ccaccaccatatttagcatcatttacttcattagtcttttc 205  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  36493164 ccaccaccatatttggcatcgtttacttcattagtcttttc 36493204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 36468228 - 36468271
Alignment:
Q  59 accacctccaccgtggttgtaaccacctccaccgtggtggtaac 102  Q
    |||||||||||||| || ||||||||||||||||| ||||||||    
T  36468228 accacctccaccgttgtggtaaccacctccaccgttgtggtaac 36468271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 36435953 - 36436022
Alignment:
Q  75 ttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaac 144  Q
    |||||||| |||||||| |||| ||| | |||||| || | |||||||| ||| ||||||||||||||||    
T  36435953 ttgtaacctcctccaccatggttgtagccacctccaccgttgttgtaaccaccaccaccatggttgtaac 36436022  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 36475908 - 36475945
Alignment:
Q  59 accacctccaccgtggttgtaaccacctccaccgtggt 96  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  36475908 accacctccaccgtggttgtaaccgcctccaccatggt 36475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 36411253 - 36411293
Alignment:
Q  51 ccaccgtgaccacctccaccgtggttgtaaccacctccacc 91  Q
    ||||||||||||| || ||||||||||| ||||||||||||    
T  36411253 ccaccgtgaccacgtctaccgtggttgtgaccacctccacc 36411293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 36436000 - 36436064
Alignment:
Q  59 accacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaac 123  Q
    |||||| ||||| |||||||||||||||||||||| || ||||| ||| || || ||||| ||||    
T  36436000 accaccaccaccatggttgtaaccacctccaccgttgttgtaaccaccaccgccgtggttataac 36436064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 36475995 - 36476051
Alignment:
Q  116 gttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccacc 172  Q
    |||||||| |||||||||||||||||| |  ||||||| |||||| | |||||||||    
T  36475995 gttgtaaccacctccaccatggttgtatccaccaccattgttgtatccaccaccacc 36476051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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