View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12142_low_24 (Length: 250)
Name: NF12142_low_24
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12142_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 12551104 - 12551338
Alignment:
| Q |
1 |
aaccattatataatatagttgatgatcgtgatcgcaaaacaacaaaggtcttgatgttataatttagatcgttgtcacaaacttttatttaaaatctaac |
100 |
Q |
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| T |
12551104 |
aaccattatataatatagttgatgatcgtgatcgcaaaacaacaaagatcttgatgttataatttagatcgttgtcacaaacttttatttaaaatctaac |
12551203 |
T |
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| Q |
101 |
actaaactaattgaacaaccaacattatttcagagttagaaatcaatttagttttcctgtttcataattaaattctgcgtcacaccctgcaacatcctac |
200 |
Q |
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| T |
12551204 |
actaaactaattgaacaaccaacattatttcagagttagaaatcaatttagttttcctgtttcataattaaattctgcgtcacaccctgcaacatcctac |
12551303 |
T |
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| Q |
201 |
gtacgtttgttcacttcatgggcatgcagttttgt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
12551304 |
gtacgtttgttcacttcatgggcatgcagttttgt |
12551338 |
T |
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