View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12142_low_36 (Length: 204)

Name: NF12142_low_36
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12142_low_36
NF12142_low_36
[»] chr4 (4 HSPs)
chr4 (116-184)||(52796839-52796907)
chr4 (54-121)||(52794481-52794549)
chr4 (24-56)||(52794426-52794458)
chr4 (92-140)||(52798641-52798689)
[»] chr8 (1 HSPs)
chr8 (92-133)||(39710357-39710398)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 52796839 - 52796907
Alignment:
Q  116 gattctcagcatttcattgtcatcaactactgttgcagcagtgaatgctccttcaccaagtcctaatcg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52796839 gattctcagcatttcattgtcatcaactactgttgcagcagtgaatgctccttcaccaagtcctaatcg 52796907  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 52794481 - 52794549
Alignment:
Q  54 tccccaaacaactaatcaatgtcgagatctagttttc-tttttcttttgatcgtatcaatgttgattct 121  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  52794481 tccccaaacaactaatcaatgacgagatctagttttcttttttcttttgatcgtatcaatgttgattct 52794549  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 52794426 - 52794458
Alignment:
Q  24 actcactcttatcacacatttcaatttcaatcc 56  Q
    |||||||||||||||||||||||||||||||||    
T  52794426 actcactcttatcacacatttcaatttcaatcc 52794458  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 52798641 - 52798689
Alignment:
Q  92 ttttcttttgatcgtatcaatgttgattctcagcatttcattgtcatca 140  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  52798641 ttttcttttgatcgtatcaatgttgattatcaacattttattgttatca 52798689  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 39710357 - 39710398
Alignment:
Q  92 ttttcttttgatcgtatcaatgttgattctcagcatttcatt 133  Q
    |||||||||||| ||||||||||||||||| |||| ||||||    
T  39710357 ttttcttttgattgtatcaatgttgattcttagcacttcatt 39710398  T

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