View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12142_low_5 (Length: 642)
Name: NF12142_low_5
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12142_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Complemental strand, 51919635 - 51919008
Alignment:
| Q |
1 |
taaaaggaagataaacaaataacaagatgcgatgttaatccttttcagataaccaaactagttctcttaaacacaacatccataaatctacgaaacacaa |
100 |
Q |
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| T |
51919635 |
taaaaggaagataaacaagtaacaagatgcgatgctaacccttttcagataaccaaactagttctcttaaacacaacatccataaatctaggaaacacaa |
51919536 |
T |
|
| Q |
101 |
cattaatatgcatcaccatttgaacccttcatagaacgtcaacaacattttattctatgaaacaaaacatgtcaaacacaaatagtataaaaatatcttg |
200 |
Q |
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| T |
51919535 |
cgttaatgtgcatcaccatttgaacccttcgcagaacgtcaacaacattttattctatgaaacaaaatatgtcaaccacaaatagtataaaaatatcttg |
51919436 |
T |
|
| Q |
201 |
attctcaagaatgatttcttatgctcgatcattttgtaaaatgcggcttctagaatagcctgtcccaccatataannnnnnnnnnnnnnnataattaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
51919435 |
attctcaagaatgatttcttatgctcgatcattttgtaaaatgcggcttctagaatagcctgtcccaccataga-----tttttttttttataattaaaa |
51919341 |
T |
|
| Q |
301 |
tgtaatatatatgctctattttcttgtcnnnnnnnnnntatatactctattttttcatccaatttccatttcatatttttcctcgatactaaggatcatg |
400 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51919340 |
tgtaatatatatgctctattttcttgtc-aaaaaaacatatatgccctattttttcatccaatttccatttcatatttttcctcgatactaaggatcatg |
51919242 |
T |
|
| Q |
401 |
caaataatacatgcatcacttagtttattgagctaaaaacccgtgaatatgcatcgtacgtataccgagacaaaatataaaatgtgggggatgcaaatta |
500 |
Q |
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||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51919241 |
caaataagacacgcatcacttagtctattgagctaaaaacccgtgaacatgcatcgtacgtataccgagacaaaatataaaatgtgggggatgcaaatta |
51919142 |
T |
|
| Q |
501 |
caatttgaataaattgttgcactctatacaattgggtttattatccataaactatt-------atgtatatgtcactgctactttactttcttgacaaga |
593 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
51919141 |
caatttgaataaattgttgcactctatacaattgggtttattatccataaattattatgtataatgtatatgtcactgctgctttactttcttgacaaga |
51919042 |
T |
|
| Q |
594 |
ataccactagcttctgaaaaacaatcaaacacag |
627 |
Q |
| |
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||||| ||||||||||||| |||||||||||||| |
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| T |
51919041 |
ataccgctagcttctgaaacacaatcaaacacag |
51919008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 34536996 - 34536964
Alignment:
| Q |
171 |
gtcaaacacaaatagtataaaaatatcttgatt |
203 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
34536996 |
gtcaaacacaaatagtataaaaatatgttgatt |
34536964 |
T |
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