View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12142_low_7 (Length: 521)

Name: NF12142_low_7
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12142_low_7
NF12142_low_7
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-511)||(200042-200544)
[»] chr4 (12 HSPs)
chr4 (1-511)||(28948426-28948928)
chr4 (1-511)||(22990554-22991047)
chr4 (110-511)||(22703070-22703454)
chr4 (1-115)||(22714557-22714671)
chr4 (384-506)||(22698733-22698848)
chr4 (384-506)||(22981682-22981797)
chr4 (384-506)||(22995269-22995384)
chr4 (380-463)||(56560508-56560591)
chr4 (380-463)||(24036214-24036297)
chr4 (380-464)||(16565539-16565623)
chr4 (380-464)||(15618844-15618928)
chr4 (414-459)||(52056997-52057042)
[»] chr8 (6 HSPs)
chr8 (384-506)||(19648194-19648309)
chr8 (380-463)||(193387-193470)
chr8 (380-463)||(720991-721074)
chr8 (380-463)||(882098-882181)
chr8 (380-463)||(30983223-30983306)
chr8 (380-463)||(44240122-44240205)
[»] chr1 (8 HSPs)
chr1 (384-506)||(4345989-4346104)
chr1 (380-463)||(46407488-46407571)
chr1 (380-463)||(50978939-50979022)
chr1 (387-463)||(35606336-35606412)
chr1 (380-464)||(35569906-35569990)
chr1 (1-79)||(5928141-5928219)
chr1 (422-462)||(50979027-50979067)
chr1 (75-103)||(5928350-5928378)
[»] chr5 (5 HSPs)
chr5 (384-506)||(22809984-22810099)
chr5 (380-463)||(33232457-33232540)
chr5 (380-463)||(7072032-7072115)
chr5 (380-464)||(22481515-22481599)
chr5 (277-323)||(22808657-22808703)
[»] chr3 (4 HSPs)
chr3 (384-502)||(7011653-7011764)
chr3 (380-463)||(51125383-51125466)
chr3 (380-463)||(52692542-52692625)
chr3 (407-464)||(16246819-16246876)
[»] chr2 (6 HSPs)
chr2 (384-506)||(23360942-23361058)
chr2 (380-463)||(13895999-13896082)
chr2 (380-463)||(14036616-14036699)
chr2 (380-463)||(14380107-14380190)
chr2 (380-464)||(5916944-5917028)
chr2 (380-464)||(36311597-36311681)
[»] chr6 (4 HSPs)
chr6 (380-463)||(21515703-21515786)
chr6 (380-463)||(30019220-30019303)
chr6 (380-464)||(16547456-16547540)
chr6 (387-465)||(17830767-17830845)
[»] chr7 (4 HSPs)
chr7 (380-465)||(37638703-37638788)
chr7 (5-79)||(20087918-20087992)
chr7 (380-465)||(10372714-10372799)
chr7 (419-464)||(12963342-12963387)
[»] scaffold0394 (1 HSPs)
scaffold0394 (387-458)||(6607-6678)


Alignment Details
Target: scaffold0009 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 200544 - 200042
Alignment:
Q  1 tttgcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatg 100  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200544 tttgcttcggatttgttgttcacttatcctccataaactatatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatg 200445  T
Q  101 ttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctggggg 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  200444 ttttttgtaacattcaaagcatgtttcttatggttttgcggctggtttggttgcagcttcaggtgctgttcctggcctgctaacctgctacggctggggg 200345  T
Q  201 tagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaactggactgcctcttcctt 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||    
T  200344 tagttttttggccaagggtctggttggtttttgttgtctctgtagttgctttctagactttctaggc-tttttttatgttaactggactgcctcttcctt 200246  T
Q  301 ctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattatta 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  200245 ctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattatta 200146  T
Q  401 tcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaa 500  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||     
T  200145 tcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatgcctaaattcacaattat 200053  T
Q  501 gacacaggttc 511  Q
    |||||||||||    
T  200052 gacacaggttc 200042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 28948928 - 28948426
Alignment:
Q  1 tttgcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatg 100  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28948928 tttgcttcggatttgttgttcacttatcctccttaaactctatatttcagttttaactagttatatataagctatatttgtaatgccatgatttcttatg 28948829  T
Q  101 ttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctggggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  28948828 ttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcagctgctgttcctggcctgctaacctgctacggttggggg 28948729  T
Q  201 tagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaactggactgcctcttcctt 300  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||    
T  28948728 tagttttttggccaagggcctggttggttttgtttgtctctgtaattgctttctagactttctagg-atttttttatgttaactggactgcctcttcctt 28948630  T
Q  301 ctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattatta 400  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  28948629 ctggtgtttcggtttgcaaacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattatta 28948530  T
Q  401 tcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaa 500  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  28948529 tcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatgcctaaattcacaattaa 28948437  T
Q  501 gacacaggttc 511  Q
    |||||||||||    
T  28948436 gacacaggttc 28948426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 22990554 - 22991047
Alignment:
Q  1 tttgcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990554 tttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatg 22990653  T
Q  101 ttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctggggg 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22990654 ttttttgtaacattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcaggtgctgttcctggcctgctaacctgctacggctggggg 22990753  T
Q  201 tagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaactggactgcctcttcctt 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |            |||||||||||||||||||||||||    
T  22990754 tagttttttggccaagggtctggttggtttttgttgtctctgtagttgctttctaggcttttt----------ttatgttaactggactgcctcttcctt 22990843  T
Q  301 ctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattatta 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  22990844 ctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattatta 22990943  T
Q  401 tcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaa 500  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||     
T  22990944 tcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatgcctaaattcacaattat 22991036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 110 - 511
Target Start/End: Complemental strand, 22703454 - 22703070
Alignment:
Q  110 acattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctgggggtagtttttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703454 acattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcaggtgctgttcctggcctgctaacctgctacggctgggggtagtttttt 22703355  T
Q  210 ggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaactggactgcctcttccttctggtgttt 309  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |            ||||||||||||||||||||||||||||||||||    
T  22703354 ggccaagggtctggttggtttttgttgtctctgtagttgctttctaggcttttt----------ttatgttaactggactgcctcttccttctggtgttt 22703265  T
Q  310 cggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattattatcacttaag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||    
T  22703264 cggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattattatcactcaag 22703165  T
Q  410 tgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaagacacaggt 509  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||    
T  22703164 tttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatgcctaaattcacaattatgacacaggt 22703072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 22714671 - 22714557
Alignment:
Q  1 tttgcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22714671 tttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatg 22714572  T
Q  101 ttttttgtgacattc 115  Q
    |||||||| ||||||    
T  22714571 ttttttgtaacattc 22714557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 384 - 506
Target Start/End: Original strand, 22698733 - 22698848
Alignment:
Q  384 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 483  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22698733 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22698825  T
Q  484 cctaaattcacaattaagacaca 506  Q
    |||||||||||||||||||||||    
T  22698826 cctaaattcacaattaagacaca 22698848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 384 - 506
Target Start/End: Complemental strand, 22981797 - 22981682
Alignment:
Q  384 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 483  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22981797 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22981705  T
Q  484 cctaaattcacaattaagacaca 506  Q
    |||||||||||||||||||||||    
T  22981704 cctaaattcacaattaagacaca 22981682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 384 - 506
Target Start/End: Complemental strand, 22995384 - 22995269
Alignment:
Q  384 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 483  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22995384 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22995292  T
Q  484 cctaaattcacaattaagacaca 506  Q
    |||||||||||||||||||||||    
T  22995291 cctaaattcacaattaagacaca 22995269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 56560508 - 56560591
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  56560508 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 56560591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Complemental strand, 24036297 - 24036214
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  24036297 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 24036214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 16565539 - 16565623
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 464  Q
    |||||| ||| | ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16565539 taatgaagtaatcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16565623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 15618844 - 15618928
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 464  Q
    |||||| ||||| ||||| ||||||| |||| || | |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  15618844 taatgaagtattcaattactatcactcaagtttaggatgcacaattgaaaaaacttttggggtatggaagaatagatttgcaatt 15618928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 52057042 - 52056997
Alignment:
Q  414 aggtgcacaatagaaagaacttttggtgtatggaagaatagatttg 459  Q
    |||||||||||||||| ||||||| | ||||||||||| |||||||    
T  52057042 aggtgcacaatagaaataacttttagggtatggaagaacagatttg 52056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 384 - 506
Target Start/End: Original strand, 19648194 - 19648309
Alignment:
Q  384 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 483  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  19648194 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 19648286  T
Q  484 cctaaattcacaattaagacaca 506  Q
    |||||||||||||||||||||||    
T  19648287 cctaaattcacaattaagacaca 19648309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 193387 - 193470
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  193387 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 193470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 720991 - 721074
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  720991 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 882098 - 882181
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  882098 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 882181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Complemental strand, 30983306 - 30983223
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  30983306 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 30983223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 44240122 - 44240205
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| ||||||||||||||||||| |||| |||| | ||||||||||||||||||||| ||||||||||| | |||||||||    
T  44240122 taatgaagtatttaattattatcactcaagtttaagatacacaatagaaagaacttttggggtatggaagaacatatttgcaat 44240205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 384 - 506
Target Start/End: Original strand, 4345989 - 4346104
Alignment:
Q  384 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 483  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  4345989 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 4346081  T
Q  484 cctaaattcacaattaagacaca 506  Q
    |||||||||||||||||||||||    
T  4346082 cctaaattcacaattaagacaca 4346104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 46407488 - 46407571
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  46407488 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 46407571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Complemental strand, 50979022 - 50978939
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  50979022 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 50978939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 387 - 463
Target Start/End: Original strand, 35606336 - 35606412
Alignment:
Q  387 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  35606336 gtatttaattattatcactcaagtttaaggtgcacaatagaaagaactgttggggtatggaagaacagatttgcaat 35606412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 380 - 464
Target Start/End: Complemental strand, 35569990 - 35569906
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 464  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  35569990 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaataaatttgcaatt 35569906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 5928141 - 5928219
Alignment:
Q  1 tttgcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatattt 79  Q
    |||||||| |||||||||| | ||||||||| |||||||||||||||||||||||| | ||| |||||||||| |||||    
T  5928141 tttgcttcagatttgttgtgcacttatcctcaataaactctatatttcagttttaagtggttctatataagctctattt 5928219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 50979067 - 50979027
Alignment:
Q  422 aatagaaagaacttttggtgtatggaagaatagatttgcaa 462  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  50979067 aatagaaagaacttttggggtatggaagaacagatttgcaa 50979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 5928350 - 5928378
Alignment:
Q  75 tatttgcaatgccatgatttcttatgttt 103  Q
    |||||||||||||||||||||||||||||    
T  5928350 tatttgcaatgccatgatttcttatgttt 5928378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 384 - 506
Target Start/End: Original strand, 22809984 - 22810099
Alignment:
Q  384 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 483  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22809984 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22810076  T
Q  484 cctaaattcacaattaagacaca 506  Q
     ||||||||||||||||||||||    
T  22810077 actaaattcacaattaagacaca 22810099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 33232457 - 33232540
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  33232457 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 33232540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 380 - 463
Target Start/End: Complemental strand, 7072115 - 7072032
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  7072115 taatgaagtatttaattattatcactcaaatttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 7072032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 22481515 - 22481599
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 464  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  22481515 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 22481599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 22808657 - 22808703
Alignment:
Q  277 tgttaactggactgcctcttccttctggtgtttcggtttgcagacat 323  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||    
T  22808657 tgttaattggactgcctcttccttctggtgtttcggtctgcagacat 22808703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 384 - 502
Target Start/End: Original strand, 7011653 - 7011764
Alignment:
Q  384 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 483  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  7011653 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 7011745  T
Q  484 cctaaattcacaattaaga 502  Q
    |||||||||||||||||||    
T  7011746 cctaaattcacaattaaga 7011764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Complemental strand, 51125466 - 51125383
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  51125466 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 51125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 52692542 - 52692625
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  52692542 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 52692625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 16246876 - 16246819
Alignment:
Q  407 aagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 464  Q
    |||| |||| |||||||| ||||||||||||   | ||||||||||||||||||||||    
T  16246876 aagtttaagatgcacaattgaaagaacttttaaggcatggaagaatagatttgcaatt 16246819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 384 - 506
Target Start/End: Complemental strand, 23361058 - 23360942
Alignment:
Q  384 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaac-ttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat 482  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||||       |||||||||||||||||||||    
T  23361058 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaactttttggtgtatgaaagaatag-------atttgcaattctacgacgcat 23360966  T
Q  483 gcctaaattcacaattaagacaca 506  Q
    | ||||||||||||||||||||||    
T  23360965 gactaaattcacaattaagacaca 23360942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 13895999 - 13896082
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13895999 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 13896082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 14036616 - 14036699
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14036616 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14036699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 14380107 - 14380190
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14380107 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14380190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 380 - 464
Target Start/End: Complemental strand, 5917028 - 5916944
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 464  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  5917028 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 5916944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 36311597 - 36311681
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 464  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  36311597 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 36311681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 463
Target Start/End: Complemental strand, 21515786 - 21515703
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  21515786 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 21515703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 30019220 - 30019303
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 463  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  30019220 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 30019303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 16547456 - 16547540
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 464  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16547456 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16547540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 465
Target Start/End: Complemental strand, 17830845 - 17830767
Alignment:
Q  387 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 465  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  17830845 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 17830767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 380 - 465
Target Start/End: Original strand, 37638703 - 37638788
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 465  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37638703 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggtgtatggaagaatagatttgcaattt 37638788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 20087918 - 20087992
Alignment:
Q  5 cttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatattt 79  Q
    |||| |||||||||||| | | |||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  20087918 cttcagatttgttgttcacctgtcctccataagctctatatttcagttttaactggttatatataagctctattt 20087992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 10372799 - 10372714
Alignment:
Q  380 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 465  Q
    |||||| |||||  |||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  10372799 taatgaagtattcgattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 10372714  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 12963342 - 12963387
Alignment:
Q  419 cacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 464  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  12963342 cacaattgaaagaacttttggggtatggaagaatagatttgcaatt 12963387  T

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Target: scaffold0394 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 458
Target Start/End: Complemental strand, 6678 - 6607
Alignment:
Q  387 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagattt 458  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||    
T  6678 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagattt 6607  T

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