View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12142_low_8 (Length: 503)
Name: NF12142_low_8
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12142_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 20 - 496
Target Start/End: Original strand, 45161822 - 45162298
Alignment:
| Q |
20 |
ttatattatacatgtaagtatagatatatagaatctcttcacgtaagtagctaggacaacgttgagtttttgttttacgataaggaattctttgatgttg |
119 |
Q |
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| T |
45161822 |
ttatattatacatgtaagtatagatatatagaatctcttcacgtaagtagctaggacaacgttgagtttttgttttacgataaggaattctttgatgttg |
45161921 |
T |
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| Q |
120 |
ctgattaaaatgacttgcatcattttcattgctgatgcagccannnnnnnggacatacatgaattctatggcagaattcgtatacaaccgtactgctttt |
219 |
Q |
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| T |
45161922 |
ctgattaaaatgacttgcatcattttcattgctgatgcagccatttttttggacatacatgaattctatggcagaattcgtatacaaccgtactgctttt |
45162021 |
T |
|
| Q |
220 |
gttctctaatgaagaggacgcgtttttgtgaaaataaaaagccaaattaattttgtttgaactttgtaaatcgtattaatatcactttcttaagatcgta |
319 |
Q |
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| T |
45162022 |
gttctctaatgaagaagacgcgtttttgtgaaaataaaaagccaaattaattttgtttgaactttgtaaatcgtattaatatcactttctcaagatcgta |
45162121 |
T |
|
| Q |
320 |
catatctatcttcattataggcatataggctctgtatgcaagttgttatcatgttgtacaatgtggtccaaaccaattaagcatggaagtttgcataata |
419 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45162122 |
cagatctatcttcattataggcatatacgctctgtatgcaagttgttatcatgttgtacaatgtggtccaaaccaattaagcatggaagtttgcataata |
45162221 |
T |
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| Q |
420 |
agatcaatcaaaagatatcgtaaggctctaatgtatgaactacagtgcaattcttggtttgtcttttgtttctgtgc |
496 |
Q |
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| T |
45162222 |
agatcaatcaaaagatatcgtaaggctctaatgtatgaactacagtgcaattcttggtttgtcttttgtttctgtgc |
45162298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 16051896 - 16051859
Alignment:
| Q |
337 |
taggcatataggctctgtatgcaagttgttatcatgtt |
374 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
16051896 |
taggcttataggctctgtatgcaagttgttatcatgtt |
16051859 |
T |
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