View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12142_low_9 (Length: 473)
Name: NF12142_low_9
Description: NF12142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12142_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 455
Target Start/End: Original strand, 46112914 - 46113356
Alignment:
| Q |
14 |
cctgtgaggcttcaggatttagttggtccattccaacttcgcatgggccttgggtctggaagacctatagtagaagaaatggaaaagggttgtgtagagg |
113 |
Q |
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| T |
46112914 |
cctgtgaggcttcaggatttagttggtccattccaacttcgcatgggccttggatctggaagacctatagtagaagaaatggaaaagggttgtgtagagg |
46113013 |
T |
|
| Q |
114 |
ggcaaaaatgggaataagtagtaagatttagagatcccacacattttttcattatagtgnnnnnnnctagtaaattagtggcggaggaagggtaagnnnn |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
46113014 |
ggcaaaaatgggaataagtagtaagatttagagatcccacacattttttcattatagggaaaaaaactagtaaattagtggcggaggaagggtaagtttt |
46113113 |
T |
|
| Q |
214 |
nnngacattttattagttgtggaaaaggagctttgctctggggtattacatactccatcttttgtaatacattttctttcttcaataatacaccattttt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46113114 |
tttgacattttattagttgtggaaaaggagctttgctctggggtattacatactccatcttttgtaatacattttctttcttcaataatacaccattttt |
46113213 |
T |
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| Q |
314 |
tagttccttatttttctgatctctgacatgtttgtttcagaataaaaaattactaattgtcatgtgattacatctgtagaaagt-nnnnnnngcctgctt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46113214 |
tagttccttatttttctgatctctgacatgtttgtttcagaataaaaaattactaattgtcatgtgattacatctgtagaaagtcaaaaaaagcctgctt |
46113313 |
T |
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| Q |
413 |
gatttgattaaagcagaattttggtgcagtagtcattaactat |
455 |
Q |
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| T |
46113314 |
gatttgattaaagcagaattttggtgcagtagtcattaactat |
46113356 |
T |
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