View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12143_high_3 (Length: 381)
Name: NF12143_high_3
Description: NF12143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12143_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 371
Target Start/End: Complemental strand, 8690971 - 8690606
Alignment:
| Q |
6 |
agaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatgggg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690971 |
agaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatgggg |
8690872 |
T |
|
| Q |
106 |
tttgttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngaga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8690871 |
tttgttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgaga |
8690772 |
T |
|
| Q |
206 |
tagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690771 |
tagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttga |
8690672 |
T |
|
| Q |
306 |
aaatgtgttttgcnnnnnnngtagcaacaaaatgagacaaagagagactttctaataccacctatg |
371 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690671 |
aaatgtgttttgctttttttgtagcaacaaaatgagacaaagagagactttctaataccacctatg |
8690606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 8705249 - 8704991
Alignment:
| Q |
8 |
aaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggg--- |
104 |
Q |
| |
|
||||||||||| || |||| ||||||| | ||| |||||||||||||| |||||||||| |||| |||||||||| |||||||||||||| ||| |
|
|
| T |
8705249 |
aaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaaaacattaaaaaggttgcatttttatgagaaaataatgaagggttt |
8705150 |
T |
|
| Q |
105 |
gtttgtt-----acctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnn |
199 |
Q |
| |
|
||||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8705149 |
gtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaagtaactttttt |
8705050 |
T |
|
| Q |
200 |
nngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaac |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705049 |
ttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaac |
8704991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 8740327 - 8740138
Alignment:
| Q |
6 |
agaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatgggg |
105 |
Q |
| |
|
||||||||||||| | |||| |||||||||| |||| ||||||||||||| |||||||||| ||| ||| ||| | | ||||||||||||| ||| |
|
|
| T |
8740327 |
agaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaaaacattaacaaggttgaattactttaagaaaataatgataggg |
8740228 |
T |
|
| Q |
106 |
tttgtt--------acctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattacca |
187 |
Q |
| |
|
|||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8740227 |
tttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattacca |
8740138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 110 - 257
Target Start/End: Complemental strand, 8722216 - 8722069
Alignment:
| Q |
110 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagt |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||| |
|
|
| T |
8722216 |
ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagt |
8722117 |
T |
|
| Q |
210 |
ggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa |
257 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
8722116 |
agtttacaagctcttgatctgttggatggaatctgaatccaacaggaa |
8722069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 8723561 - 8723482
Alignment:
| Q |
110 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag |
189 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8723561 |
ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag |
8723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 257
Target Start/End: Complemental strand, 8738643 - 8738501
Alignment:
| Q |
115 |
tggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggttt |
214 |
Q |
| |
|
|||||| |||||||| || ||| |||| ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| ||| ||||| || |
|
|
| T |
8738643 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta |
8738544 |
T |
|
| Q |
215 |
acaagctcttcatctgttggtcggaatctgaatccaacaggaa |
257 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8738543 |
actagttcttcatttgttggtcggaatctgaatccgacaggaa |
8738501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 14372476 - 14372554
Alignment:
| Q |
6 |
agaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcatttt |
84 |
Q |
| |
|
||||||||||||| || |||| ||||||| || |||||||||||||||||| || ||||||| |||| ||||||||| |
|
|
| T |
14372476 |
agaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaagaacattaaaaaggttgcatttt |
14372554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University