View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12143_high_5 (Length: 238)
Name: NF12143_high_5
Description: NF12143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12143_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 29364198 - 29364027
Alignment:
| Q |
14 |
atgaagtttgagtttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgaagagaaaattaccaagc |
113 |
Q |
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| T |
29364198 |
atgaggtttgagtttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgatgagaaaattaccaagc |
29364099 |
T |
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| Q |
114 |
aattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat |
185 |
Q |
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| T |
29364098 |
aattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat |
29364027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 29362951 - 29362910
Alignment:
| Q |
178 |
ttgatgattcagtaataacgaatctcttagttctatgagttg |
219 |
Q |
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| T |
29362951 |
ttgatgattcagtaataacgaatctctaagttctatgagttg |
29362910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 29353809 - 29353713
Alignment:
| Q |
85 |
tatgtgtgttgaagagaaaattaccaagcaattgttgagaaagaaagttgattttttc--ggaaataagagagaaaaagttgaattctttttgttttg |
180 |
Q |
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| T |
29353809 |
tatgtgtgttgatgatataattacctagtagttgttgaggaagaaagtcgatttttttttggaaa-aggagagaaaaagtcgaattcttttcgttttg |
29353713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 27754192 - 27754121
Alignment:
| Q |
142 |
cggaaataagagagaaaaagttgaattctttttgtttt------gatgattcagtaataacgaatctcttag |
207 |
Q |
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| T |
27754192 |
cggaaataagagagaaaaagttgaattctttttgtttttgtttcgatgattcaataataatgaatctcttag |
27754121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 29358638 - 29358703
Alignment:
| Q |
113 |
caattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttt |
178 |
Q |
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| T |
29358638 |
caattgttgagagagaaagtttagttttttggaaaaaggagagagaaagttgaattctttttgttt |
29358703 |
T |
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