View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12143_low_1 (Length: 417)
Name: NF12143_low_1
Description: NF12143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12143_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 29006026 - 29006423
Alignment:
| Q |
1 |
ataggcacctccaaatacccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggcc |
100 |
Q |
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| T |
29006026 |
ataggcacctccaaatacccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggcc |
29006125 |
T |
|
| Q |
101 |
ccgacataaaaaataaataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006126 |
ccgacataaaaaataaataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgtt |
29006225 |
T |
|
| Q |
201 |
tatggtgataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006226 |
tatggtgataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtc |
29006325 |
T |
|
| Q |
301 |
tcttttcttattaaacactaatggaaacaactcacaaaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaatagg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006326 |
tcttttcttattaaacactaatggaaacaactcacaaaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaatagg |
29006423 |
T |
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