View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12143_low_4 (Length: 348)
Name: NF12143_low_4
Description: NF12143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12143_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 268
Target Start/End: Original strand, 39322207 - 39322446
Alignment:
| Q |
35 |
ccttctatttgtttacggcttgaatgtagcattagttgttggtggcaacgatgacttgtttcaattgtaaaataaacttaa------aatatgcactagc |
128 |
Q |
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| T |
39322207 |
ccttctatttgtttactgcttgaatgtagcattagttgttggtggcaacgatgacttgtttcaattgtataataaacttaaaattaaaatatgcactagc |
39322306 |
T |
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| Q |
129 |
taggttgataatttagttgagtttaataatagttgataaacaatttccccttcaagaatttcaaagtagcgtattatattaatatgcaaattcctgttcg |
228 |
Q |
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| T |
39322307 |
taggttgataatttagttgagtttaataatagttgataaacaatttccccttcaagaatttcaaagtagcgtattatattaatatgcaaattcctgttcg |
39322406 |
T |
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| Q |
229 |
aaaaaataaaatcagtcacatattatggtcagtgtacaaa |
268 |
Q |
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| T |
39322407 |
aaaaaataaaatcattcacatattatggtcagtgtacaaa |
39322446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 39322444 - 39322492
Alignment:
| Q |
291 |
aaataatttacaaatatgcaaaagtaaagttccaggatggcacacaggt |
339 |
Q |
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| T |
39322444 |
aaataatttacaaataagcaaaagtaaagttccaggatggcacacaggt |
39322492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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