View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12143_low_8 (Length: 209)
Name: NF12143_low_8
Description: NF12143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12143_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 49247642 - 49247818
Alignment:
| Q |
18 |
aggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaaggaaatggctccgcaagcagaaac |
117 |
Q |
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| T |
49247642 |
aggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaaggaaatggctcagcaagcagaaac |
49247741 |
T |
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| Q |
118 |
caaagtaacgactcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaag |
194 |
Q |
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| T |
49247742 |
caaagtaacgactcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaag |
49247818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 49247753 - 49247825
Alignment:
| Q |
21 |
ctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaa |
93 |
Q |
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| T |
49247753 |
ctcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaagaaaccaa |
49247825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 49247636 - 49247710
Alignment:
| Q |
120 |
aagtaacgactcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaag |
194 |
Q |
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| T |
49247636 |
aagtaaaggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaag |
49247710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 49247763 - 49247828
Alignment:
| Q |
112 |
agaaaccaaagtaacgactcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaaga |
177 |
Q |
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| T |
49247763 |
agaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaagaaaccaaaga |
49247828 |
T |
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