View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12144_low_1 (Length: 607)

Name: NF12144_low_1
Description: NF12144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12144_low_1
NF12144_low_1
[»] chr1 (4 HSPs)
chr1 (8-590)||(36395512-36396096)
chr1 (308-397)||(44719928-44720018)
chr1 (315-388)||(11060191-11060265)
chr1 (308-388)||(1408223-1408303)
[»] chr5 (2 HSPs)
chr5 (312-397)||(23772958-23773044)
chr5 (308-397)||(28864751-28864841)
[»] chr6 (2 HSPs)
chr6 (308-379)||(33986888-33986959)
chr6 (315-388)||(11074633-11074701)
[»] chr8 (5 HSPs)
chr8 (308-397)||(9625944-9626034)
chr8 (308-397)||(31074571-31074661)
chr8 (310-388)||(28525348-28525427)
chr8 (308-349)||(28005937-28005978)
chr8 (308-349)||(28063240-28063281)
[»] chr4 (2 HSPs)
chr4 (308-376)||(24752997-24753065)
chr4 (308-388)||(24745520-24745600)
[»] chr2 (3 HSPs)
chr2 (308-388)||(18675650-18675730)
chr2 (310-388)||(14886927-14887005)
chr2 (311-388)||(26585789-26585867)
[»] chr7 (1 HSPs)
chr7 (308-397)||(330486-330576)


Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Complemental strand, 36396096 - 36395512
Alignment:
Q  8 gagcacagaccattattagtcaaaattctaaacgatatacagacagaacaggacattattaatcaaaattctatacgatacacagacaaaacaggacatt 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36396096 gagcacagaccattattagtcaaaattctatacgatatacagacagaacaggacattattaatcaaaattctatacgatacacagacaaaacaggacatt 36395997  T
Q  108 attaatcaaa-ttctttacgatatacaggccattagattaaggagctagtaggggattttcaagaggaacactttcaaaaagataaagaaattttattgg 206  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36395996 attaatcaaaattatttacgatatacaggccattagattaaggagctagtaggggattttcaaaaggaacactttcaaaaagataaagaaattttattgg 36395897  T
Q  207 agtacgttgagcaaatttcatttagcctctcaagcattgttaaaatagtatatgaatgtctcaaaattataacatgttgattaaccatactaggaggttg 306  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36395896 agtactttgagcaaatttcatttagcctctcaagcattgttaaaatagtatatgaatgtctcaaaattataacatgttgattaaccatactaggaggttg 36395797  T
Q  307 gagctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatatataactgca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  36395796 gagctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaattcaagatatacaactgca 36395697  T
Q  406 cactagatgaaaatgggctttgccagcagcatgtactatagattctaagtagtaatatgcttttggatacatagcagctcattgttgctcatgacttcaa 505  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36395696 caccagatgaaaataggctttgccagcagcatgtactatagattctaagtagtaatatgcttttggatacatagcagctcattgttgctcatgacttcaa 36395597  T
Q  506 cataaattgaaacaagtactgaatttggaaaaatgtgatgcataaccagacctaagcctgaaacaatgtaggacattggtactag 590  Q
    ||||||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  36395596 cataaattgaaacaaatattgaatttggaaaaatgtgattcatacccagacctaagcctgaaacaatgtaggacattggaactag 36395512  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 308 - 397
Target Start/End: Complemental strand, 44720018 - 44719928
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 397  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  44720018 agctaataatctttcttataaaatgaaatagtataatttgaagttaacatcgagattaaaaagaagaaactatgaaggaattcaagatata 44719928  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 11060265 - 11060191
Alignment:
Q  315 aatctttcttaaaaaatg-aatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 388  Q
    |||||||||||||||||  ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11060265 aatctttcttaaaaaatttaaatagtataatttgaagttaaccttgagattaaaaagaagaaaccatgaaggaat 11060191  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 1408303 - 1408223
Alignment:
Q  308 agctaataatctttcttaaaaaatgaa-tgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 388  Q
    ||||||||||||||| ||||||||||| |||  ||||||||||||||||||||||| ||||||||| | || ||||||||||    
T  1408303 agctaataatctttcataaaaaatgaaatgac-ataatttgaagttaacattgagaataaaaagaaaagacaatgaaggaat 1408223  T

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Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 23772958 - 23773044
Alignment:
Q  312 aataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 397  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  23772958 aataatctttcttaaaaaatgaaatagtataatttgaagttaacattgagattaaaaagaagaaaccatgaagaaattcaagatata 23773044  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 308 - 397
Target Start/End: Original strand, 28864751 - 28864841
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 397  Q
    |||||||||||| | ||||||||||||  ||||| |||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||    
T  28864751 agctaataatctcttttaaaaaatgaaatagtatgatttgaagttaacattgaaattaaaaagaagaaaccaagaacgaattcaagatata 28864841  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 308 - 379
Target Start/End: Original strand, 33986888 - 33986959
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaacca 379  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  33986888 agctaataatctttcttaaaaaatgaaatagtataatttgaagttaacattgagattaaaaagaagaaacca 33986959  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 11074633 - 11074701
Alignment:
Q  315 aatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 388  Q
    |||||||||||||||||     |||||||||| ||||||| ||| ||||||||||||||||| |||||||||||    
T  11074633 aatctttcttaaaaaat-----agtataatttaaagttaatattaagattaaaaagaagaaagcatgaaggaat 11074701  T

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Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 308 - 397
Target Start/End: Original strand, 9625944 - 9626034
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 397  Q
    |||||||||| ||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  9625944 agctaataatttttcttaaaaaatgaaacaatataatttgaagttaacattaagattaaaaagaagaaaccatggaggaattcaagatata 9626034  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 308 - 397
Target Start/End: Complemental strand, 31074661 - 31074571
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 397  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||    
T  31074661 agctaataatctttcttaaaaaacgaaacagtataatttgaagttaacgtcgagattataaagaagaaaccatgaaggaattcaagatata 31074571  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 28525427 - 28525348
Alignment:
Q  310 ctaataatctttcttaaaaaa-tgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 388  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  28525427 ctaataatctttcttaaaaaaatgaaatagtataatttgaagttaacattaagattaaaaagaagaaactatgaaggaat 28525348  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 28005978 - 28005937
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaa 349  Q
    |||||||||||||||||||||||| ||  |||||||||||||    
T  28005978 agctaataatctttcttaaaaaataaaatagtataatttgaa 28005937  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 28063281 - 28063240
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaa 349  Q
    |||||||||||||||||||||||| ||  |||||||||||||    
T  28063281 agctaataatctttcttaaaaaataaaatagtataatttgaa 28063240  T

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Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 308 - 376
Target Start/End: Original strand, 24752997 - 24753065
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaa 376  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  24752997 agctaataatctttcttagaaaatgaaatagtataatttgaagttaacattgagattaaaaagaagaaa 24753065  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 308 - 388
Target Start/End: Original strand, 24745520 - 24745600
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 388  Q
    |||||||| ||||||||||||||||||  |||| ||||| || |||||||||||||||||||||||||||||| |||||||    
T  24745520 agctaatagtctttcttaaaaaatgaaatagtacaatttaaaattaacattgagattaaaaagaagaaaccataaaggaat 24745600  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 18675730 - 18675650
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 388  Q
    ||||||||||||||||||| |||||||  |||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  18675730 agctaataatctttcttaagaaatgaaatagtataacctgaagttaatattgagattaaaaagaagaaaccatgaaggaat 18675650  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 14887005 - 14886927
Alignment:
Q  310 ctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 388  Q
    |||||||| ||||||||||||| ||  ||| |||||||||||||||||||||||||||||| |||||  ||||||||||    
T  14887005 ctaataatatttcttaaaaaataaaatagtgtaatttgaagttaacattgagattaaaaaggagaaattatgaaggaat 14886927  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 26585789 - 26585867
Alignment:
Q  311 taataatctttcttaaaaaa-tgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 388  Q
    |||||||||||||||||||| | ||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  26585789 taataatctttcttaaaaaaataaaatagtataatttaaagttgacattgagattaaaaagaagaaaccatgacggaat 26585867  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 308 - 397
Target Start/End: Original strand, 330486 - 330576
Alignment:
Q  308 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 397  Q
    |||||||||| || |||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||    
T  330486 agctaataatattccttaaaaaatgaaatagtataatttgaagttaacattgaaattaaaaagaagaaaccatgtacgaattcaagatata 330576  T

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