View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12144_low_2 (Length: 280)

Name: NF12144_low_2
Description: NF12144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12144_low_2
NF12144_low_2
[»] chr4 (4 HSPs)
chr4 (19-270)||(47731740-47731991)
chr4 (19-165)||(50822894-50823040)
chr4 (19-173)||(26333912-26334066)
chr4 (21-167)||(11376216-11376355)
[»] chr5 (5 HSPs)
chr5 (21-173)||(11052044-11052196)
chr5 (21-116)||(24874052-24874147)
chr5 (46-173)||(11106747-11106874)
chr5 (61-167)||(30987097-30987203)
chr5 (30-107)||(4913900-4913977)
[»] chr2 (1 HSPs)
chr2 (21-173)||(43706607-43706759)
[»] chr7 (1 HSPs)
chr7 (27-167)||(9083023-9083164)
[»] chr6 (1 HSPs)
chr6 (57-167)||(12734486-12734595)
[»] chr8 (1 HSPs)
chr8 (76-167)||(17654871-17654961)
[»] chr3 (1 HSPs)
chr3 (87-173)||(41430547-41430633)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 47731740 - 47731991
Alignment:
Q  19 tttatgtcatctataagggtctcctgttggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatgg 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47731740 tttatgtcatctataagggtctcatgttggccaaagaaatgggtattactaattttgtttgctactctgattctcttcattgtatcaacatcctcaatgg 47731839  T
Q  119 tttcctaatgaggttttatgcttatgttgttttaatccaagagataaaacagttaagagagacaaagattgagatacttcaagagccctgtttggattga 218  Q
    ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  47731840 tttcccaatgaggtttcatgcttatgttgttttaatccaagacataaaacagttaagagagacaaagataaagatacttcaagagccctgtttggattga 47731939  T
Q  219 atggatatgtattggtttgtctacatttttcaatacttcatttttatctctg 270  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47731940 gtggatatgtattggtttgtctacatttttcaatacttcatttttatctctg 47731991  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 50823040 - 50822894
Alignment:
Q  19 tttatgtcatctataagggtctcctgttggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatgg 118  Q
    |||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| || ||| | || ||||||||||||||||||||    
T  50823040 tttatgccatctataagggtctcttgttggccaaagaaatgagtattactgattttgtttgctactctgactctttacactgtatcaacatcctcaatgg 50822941  T
Q  119 tttcctaatgaggttttatgcttatgttgttttaatccaagagataa 165  Q
    |  || |||||||||| ||||||||||||||||||| ||||| ||||    
T  50822940 tcccccaatgaggtttcatgcttatgttgttttaattcaagacataa 50822894  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 26334066 - 26333912
Alignment:
Q  19 tttatgtcatctataagggtctcctgttggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatgg 118  Q
    |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| |||||| | |||| |||||||||||| |||||    
T  26334066 tttatgccatctataagggtatcttgttggccaaagaaatgggtattactaattttgttttctactctgattctttacattatatcaacatccttaatgg 26333967  T
Q  119 tttcctaatgaggttttatgcttatgttgttttaatccaagagataaaacagtta 173  Q
       || |||||||||  ||||||||||||||||||| ||||| |||||| |||||    
T  26333966 ccccccaatgaggttacatgcttatgttgttttaattcaagacataaaagagtta 26333912  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 11376355 - 11376216
Alignment:
Q  21 tatgtcatctataagggtctcctgttggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatggtt 120  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||| ||||| |||         
T  11376355 tatgccatctataagggtcttttgttggccaaagaaatgggtattactgattttgtttgctactctgattctttacattgtatcaccatccccaa----- 11376261  T
Q  121 tcctaatgaggttttatgcttatg-ttgttttaatccaagagataaaa 167  Q
       ||||||||||| ||||||||| ||||| |||||||||| ||||||    
T  11376260 ---taatgaggtttcatgcttatgtttgttctaatccaagacataaaa 11376216  T

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Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 11052196 - 11052044
Alignment:
Q  21 tatgtcatctataagggtctcctgttggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatggtt 120  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  11052196 tatgccatctataagggtctcttgttggccaaagaaataggtattactgattttgtttgctactctgattctttacattgtatcaacatcctcaatggtt 11052097  T
Q  121 tcctaatgaggttttatgcttatgttgttttaatccaagagataaaacagtta 173  Q
     || || ||||||| ||| ||||||||| ||||| ||||| |||||| |||||    
T  11052096 ccccaacgaggtttaatgtttatgttgtattaattcaagatataaaagagtta 11052044  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 24874052 - 24874147
Alignment:
Q  21 tatgtcatctataagggtctcctgttggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaat 116  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| || |||||| | ||||||||||||||| |||||    
T  24874052 tatgtcatctataagggtctcttgttggctaaagaaatgggtattactgattttgtttgctattctgattctttacattgtatcaacatcttcaat 24874147  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 11106747 - 11106874
Alignment:
Q  46 tggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatggtttcctaatgaggttttatgcttatgt 145  Q
    |||||||| | ||||||| | || ||||  ||||||||||  ||||||||||||||||||||||||| ||||||  ||| ||||||||| ||| |||||     
T  11106747 tggccaaaaacatgggtaattctgatttattttgctactctaattctcttcattgtatcaacatccttaatggtcccctcatgaggtttcatgtttatgc 11106846  T
Q  146 tgttttaatccaagagataaaacagtta 173  Q
    |||||| || ||||| |||||| |||||    
T  11106847 tgttttgattcaagatataaaagagtta 11106874  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 30987097 - 30987203
Alignment:
Q  61 gtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatggtttcctaatgaggttttatgcttatgttgttttaatccaaga 160  Q
    |||||| | |||| ||||||||||| |||| ||||||||||||||||||||| |||| |  ||  | ||||| | ||| |||||||||||| || |||||    
T  30987097 gtattaatgatttagtttgctactctgattttcttcattgtatcaacatccttaatgatccccccaggaggtatcatgtttatgttgttttgattcaaga 30987196  T
Q  161 gataaaa 167  Q
     ||||||    
T  30987197 tataaaa 30987203  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 4913977 - 4913900
Alignment:
Q  30 tataagggtctcctgttggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaac 107  Q
    ||||| |||||| | ||||| ||||||||||||||   | ||||||||||||||||  ||||||||| ||| ||||||    
T  4913977 tataatggtctcatattggctaaagaaatgggtatcgatgattttgtttgctactcgaattctcttctttgcatcaac 4913900  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 43706759 - 43706607
Alignment:
Q  21 tatgtcatctataagggtctcctgttggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatggtt 120  Q
    |||||||| |||||||||||| |||||||||||||||| || |||||| |||||||||| ||||| || ||| | |||||| ||||||||||| |||||     
T  43706759 tatgtcatatataagggtctcttgttggccaaagaaataggcattactgattttgtttgttactctgactctttacattgtctcaacatcctccatggtc 43706660  T
Q  121 tcctaatgaggttttatgcttatgttgttttaatccaagagataaaacagtta 173  Q
     || |||||||||| ||| |||||  |||||||||||||| |||||| |||||    
T  43706659 ccccaatgaggtttcatgtttatgccgttttaatccaagacataaaatagtta 43706607  T

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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 9083164 - 9083023
Alignment:
Q  27 atctataagggtctcctgttggccaaagaaatgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatggt-ttccta 125  Q
    |||||||| |||||| ||||||||||| | |||||||||  | |||||||||||||||| ||| || | ||||||||||||||||||||||||   || |    
T  9083164 atctataaaggtctcttgttggccaaatatatgggtattcttgattttgtttgctactctgatgctttacattgtatcaacatcctcaatggtcccccca 9083065  T
Q  126 atgaggttttatgcttatgttgttttaatccaagagataaaa 167  Q
    ||||||||| ||||||||  ||||||||||||||| ||||||    
T  9083064 atgaggtttcatgcttattctgttttaatccaagatataaaa 9083023  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 12734486 - 12734595
Alignment:
Q  57 atgggtattactaattttgtttgctactccgattctcttcattgtatcaacatcctcaatggtttcctaatgaggttttatgcttatgttgttttaatcc 156  Q
    ||||||||| || |||| ||||||||||| |||||||||||||||||||||||||| ||||| | ||  ||||||||| ||| ||||| |||||| || |    
T  12734486 atgggtatttctgatttagtttgctactctgattctcttcattgtatcaacatccttaatgg-tcccccatgaggtttcatgtttatgctgttttgattc 12734584  T
Q  157 aagagataaaa 167  Q
    |||| ||||||    
T  12734585 aagatataaaa 12734595  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 17654961 - 17654871
Alignment:
Q  76 tttgctactccgattctcttcattgtatcaacatcctcaatggtttcctaatgaggttttatgcttatgttgttttaatccaagagataaaa 167  Q
    |||||||||| ||||||||| |||||||||||||||| ||||| |||| |||||||||| ||  ||||| |||||| || ||||| ||||||    
T  17654961 tttgctactctgattctctttattgtatcaacatccttaatgg-ttccaaatgaggtttcatctttatgctgttttgattcaagatataaaa 17654871  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 41430633 - 41430547
Alignment:
Q  87 gattctcttcattgtatcaacatcctcaatggtttcctaatgaggttttatgcttatgttgttttaatccaagagataaaacagtta 173  Q
    |||||||||||||||||||||||| | ||||||  |   ||||||||||||| ||||| |||||  || ||||| |||||| |||||    
T  41430633 gattctcttcattgtatcaacatctttaatggtccctccatgaggttttatgtttatgatgtttcgattcaagatataaaagagtta 41430547  T

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