View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12144_low_3 (Length: 262)
Name: NF12144_low_3
Description: NF12144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12144_low_3 |
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| [»] chr2 (12 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 5573638 - 5573400
Alignment:
| Q |
24 |
tcttgtctgcaaattatttgcaacaatgtgtcaatgggaaatctcaagttccttgtgtatttatctttggagattctttatctgatagtggaaacaacaa |
123 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573638 |
tcttgtctgcaaactattttaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattctttatctgatagtggaaacaacaa |
5573539 |
T |
|
| Q |
124 |
taaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573538 |
taaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgac |
5573439 |
T |
|
| Q |
224 |
ataataagtaacattctttcaacttggctatattattat |
262 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5573438 |
ataataagtaacattctttcaacttggctatattattat |
5573400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 5587169 - 5586945
Alignment:
| Q |
24 |
tcttgtctgcaaattatttgcaacaatgtgtcaatgggaaatctcaagttccttgtgtatttatctttggagattctttatctgatagtggaaacaacaa |
123 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5587169 |
tcttttctgcaaactatttgcaacaatgtgtcaatgggaaatcccaagtgccttgtctatttatctttggagactctttatctgatagtggaaacaacaa |
5587070 |
T |
|
| Q |
124 |
taaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgac |
223 |
Q |
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| T |
5587069 |
taaccttcctacctctgcaaaatctaattacaatccctatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgac |
5586970 |
T |
|
| Q |
224 |
ataataagtaacattctttcaactt |
248 |
Q |
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||||| ||||||||||||| ||||| |
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| T |
5586969 |
ataatcagtaacattcttttaactt |
5586945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 5576807 - 5576564
Alignment:
| Q |
17 |
attcttctcttgtctgcaaattatttgcaacaatgtgtcaatgggaaatctcaagttccttgtgtatttatctttggagattctttatctgatagtggaa |
116 |
Q |
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|||||| |||| |||||||| ||||||||||||| ||||||||| ||||| ||||| || ||| | |||||||||||||||||||||||||||||||||| |
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| T |
5576807 |
attcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattctttatctgatagtggaa |
5576708 |
T |
|
| Q |
117 |
acaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgc |
216 |
Q |
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|||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| | |
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| T |
5576707 |
acaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttc |
5576608 |
T |
|
| Q |
217 |
aattgacataataagtaacatt-ctttcaacttggctatattat |
259 |
Q |
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| T |
5576607 |
aattgacataataagtagcattccgttcaacttatctatattat |
5576564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 5593412 - 5593178
Alignment:
| Q |
17 |
attcttctcttgtctgcaaattatttgcaacaatgtgtcaatgggaaatctcaagttccttgtgtatttatctttggagattctttatctgatagtggaa |
116 |
Q |
| |
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|||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||||| |
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| T |
5593412 |
attcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaa |
5593313 |
T |
|
| Q |
117 |
acaacaataaccttc---ctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaac |
213 |
Q |
| |
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||||||| ||||||| ||| |||| ||| ||| |||||||| ||||| || || ||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
5593312 |
acaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaac |
5593213 |
T |
|
| Q |
214 |
tgcaattgacataataagtaacattctttcaactt |
248 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||| |
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| T |
5593212 |
tacaattgacataataagtaacattcttttaactt |
5593178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 12051714 - 12051944
Alignment:
| Q |
17 |
attcttctcttgtctgcaaattatttgcaacaatgtgtcaatgggaaatctcaagttccttgtgtatttatctttggagattctttatctgatagtggaa |
116 |
Q |
| |
|
|||||| || |||| ||||| ||||| ||||| ||||| ||| ||||| |||||| ||| || | ||||||||||| || ||||||| |||||||| || |
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| T |
12051714 |
attcttttcatgtccgcaaactatttacaacacagtgtctatgagaaatatcaagtacctagtctgtttatctttggggactctttatatgatagtgaaa |
12051813 |
T |
|
| Q |
117 |
acaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattga--ctttc--cgatgggtccaaccggaagatttaccaacggtagaa |
212 |
Q |
| |
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||||||||||||||||||||| ||| ||| | ||||||||||||||||||| || | ||| || | || ||||| ||||||||||||||||| ||| |
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| T |
12051814 |
acaacaataaccttcctacctttgcttaatttgattacaaaccttatggaatcgattccttcctcgctcggcgcaaccagaagatttaccaacggtcgaa |
12051913 |
T |
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| Q |
213 |
ctgcaattgacataataagtaacattctttc |
243 |
Q |
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|||||||| |||||||||||||| ||||||| |
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| T |
12051914 |
ctgcaattaacataataagtaacgttctttc |
12051944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 106 - 262
Target Start/End: Original strand, 12059228 - 12059384
Alignment:
| Q |
106 |
tgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaac |
205 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| | | ||| | |||| |||||||||||||| |||| ||||| || || || ||||||||||||| |
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| T |
12059228 |
tgatagggaaaacaacaataaccttcctacctttactgaatttgattagaaaccttatggaatcgactccccgatcagtgcagccagaagatttaccaat |
12059327 |
T |
|
| Q |
206 |
ggtagaactgcaattgacataataagtaacattctttcaacttggctatattattat |
262 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
12059328 |
ggtcgaactgcaattgacataataagtaacattctttcaatttaactatattattat |
12059384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 12064683 - 12064777
Alignment:
| Q |
150 |
attacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgacataataagtaacattctttca |
244 |
Q |
| |
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|||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |
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| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattctttca |
12064777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 5582920 - 5582835
Alignment:
| Q |
17 |
attcttctcttgtctgcaaattatttgcaacaatgtgtcaatgggaaatctcaagttccttgtgtatttatctttggagattcttt |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||| | |||||||||||||||||||| |
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|
| T |
5582920 |
attcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattcttt |
5582835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 5582793 - 5582735
Alignment:
| Q |
202 |
caacggtagaactgcaattgacataataagtaac-attctttcaacttggctatattat |
259 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||| |
|
|
| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattat |
5582735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 248
Target Start/End: Original strand, 12070179 - 12070308
Alignment:
| Q |
115 |
aaacaacaataa-ccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaac |
213 |
Q |
| |
|
|||||||||||| |||| ||||| |||| |||| |||||||||||||||||||||||| || ||| || || || ||||||||| | | |||| |
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| T |
12070179 |
aaacaacaataaacctttatacctttgcagaatccaattacaaaccttatggaattgacactctgatcggcgca-----aaaatttaccaatgatcgaac |
12070273 |
T |
|
| Q |
214 |
tgcaattgacataataagtaacattctttcaactt |
248 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||| |
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|
| T |
12070274 |
tgcaattcacataataagtaacatccttacaactt |
12070308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 5616075 - 5615983
Alignment:
| Q |
64 |
atctcaagttccttgtgtatttatctttggagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaa |
156 |
Q |
| |
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||||||||| ||||| ||||||| |||||||| || || ||||| | |||||||||||| || |||| ||| |||||||||||||||||| |
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| T |
5616075 |
atctcaagtgccttgcatatttatatttggagactccttgtctgacaatggaaacaacaacaatcttcgaaccaatgcaaaatctaattacaa |
5615983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 5582830 - 5582794
Alignment:
| Q |
128 |
cttcctacctctgcaaaatctaattacaaaccttatg |
164 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
5582830 |
cttcctacctatgcaaaatgtaattacaaaccttatg |
5582794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 36358028 - 36357883
Alignment:
| Q |
89 |
tttggagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaa |
188 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| ||||| ||| ||| |||||||| |||||||| ||||| ||||| ||||| | |
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| T |
36358028 |
tttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtccta |
36357929 |
T |
|
| Q |
189 |
ccggaagatttaccaacggtagaactgcaattgacataataagtaa |
234 |
Q |
| |
|
|||||||||||||||| || | ||| ||||||||||||| ||||| |
|
|
| T |
36357928 |
ccggaagatttaccaatggccgtacttcaattgacataatcagtaa |
36357883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 7017712 - 7017577
Alignment:
| Q |
66 |
ctcaagttccttgtgtatttatctttggagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatgg |
165 |
Q |
| |
|
||||||| |||||| | ||| | ||||| || ||||||||||| ||||||||||||||| | ||| ||| |||||||| |||||||||||| ||||| |
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|
| T |
7017712 |
ctcaagtgccttgtctttttgtttttggtgactctttatctgacagtggaaacaacaatgatcttgttacaactgcaaaagttaattacaaaccatatgg |
7017613 |
T |
|
| Q |
166 |
aattgactttccgatgggtccaaccggaagatttac |
201 |
Q |
| |
|
|| || ||||||| |||||||| ||||| ||||| |
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|
| T |
7017612 |
catcgattttccgacaggtccaacaggaaggtttac |
7017577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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