View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12145_high_6 (Length: 401)
Name: NF12145_high_6
Description: NF12145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12145_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 383
Target Start/End: Complemental strand, 1087587 - 1087210
Alignment:
| Q |
6 |
agtaacaatctccacgggtgctccactaaatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggatta |
105 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1087587 |
agtaacaatctccacaggtgctccactaaatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggatta |
1087488 |
T |
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| Q |
106 |
ctactaaggacaataccccaagttaaatctcccgaagatggatcgtcccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatc |
205 |
Q |
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| T |
1087487 |
ctactaaggacaataccccaagttaaatctcccgaagatggatcgtcccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatc |
1087388 |
T |
|
| Q |
206 |
caagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattac |
305 |
Q |
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| T |
1087387 |
caagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattac |
1087288 |
T |
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| Q |
306 |
aaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgacca |
383 |
Q |
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| T |
1087287 |
aaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgacca |
1087210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 383
Target Start/End: Complemental strand, 1104143 - 1103766
Alignment:
| Q |
6 |
agtaacaatctccacgggtgctccactaaatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggatta |
105 |
Q |
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| T |
1104143 |
agtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggatta |
1104044 |
T |
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| Q |
106 |
ctactaaggacaataccccaagttaaatctcccgaagatggatcgtcccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatc |
205 |
Q |
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|||| |||||||||| ||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104043 |
ctacgaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccatgaagttaattgacgattaagaccggtttttaggtcccatc |
1103944 |
T |
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| Q |
206 |
caagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattac |
305 |
Q |
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| T |
1103943 |
caagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattac |
1103844 |
T |
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| Q |
306 |
aaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgacca |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103843 |
aaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgacca |
1103766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 1047112 - 1046736
Alignment:
| Q |
7 |
gtaacaatctccacgggtgctccactaaatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggattac |
106 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||| ||| | |||||||| |||||||||||| ||||||| |||| ||||||||||| |
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| T |
1047112 |
gtaacaatctccataggcgctccactaaatccaactccattccaaggaccactcctatgaatttcaactgatcctcttttcaaaacaatttctggattac |
1047013 |
T |
|
| Q |
107 |
tactaaggacaataccccaagttaaatctcccgaagatggatcgtcccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatcc |
206 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||| |
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| T |
1047012 |
tacgaaggacaataccccaagttaaatctcccgaagatggatcgtcccaatttttccaagaagttaatggacgattaagaccaatttttaggtcccatcc |
1046913 |
T |
|
| Q |
207 |
aagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046912 |
aagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattaca |
1046813 |
T |
|
| Q |
307 |
aagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgacca |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
1046812 |
aagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagatcgggttgtgatgtttgttgacca |
1046736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 1071925 - 1071549
Alignment:
| Q |
7 |
gtaacaatctccacgggtgctccactaaatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggattac |
106 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||||| ||| | || ||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
1071925 |
gtaataatctccataggtgctccactaaatccaactccattccaaggaccactcctgtgaatttcaactgatccttttttcaatacaatttctggattac |
1071826 |
T |
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| Q |
107 |
tactaaggacaataccccaagttaaatctcccgaagatggatcgtcccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatcc |
206 |
Q |
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| T |
1071825 |
tatgaaggacaataccccatgttaaatctcccgatgatggatcgtcccaatttttccaagaagttaattgacgattaagaccggtttttaagtcccatcc |
1071726 |
T |
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| Q |
207 |
aagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattaca |
306 |
Q |
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| T |
1071725 |
atgcttcatgcctgccaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattaca |
1071626 |
T |
|
| Q |
307 |
aagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgacca |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1071625 |
aagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgacca |
1071549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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